GRASP: Navigating Retrosynthetic Planning with Goal-driven Policy

Yemin Yu, Ying Wei*, Kun Kuang, Zhengxing Huang, Huaxiu Yao, Fei Wu*

*Corresponding author for this work

Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

18 Citations (Scopus)

Abstract

Retrosynthetic planning occupies a crucial position in synthetic chemistry and, accordingly, drug discovery, which aims to find synthetic pathways of a target molecule through a sequential decision-making process on a set of feasible reactions. While the majority of recent works focus on the prediction of feasible reactions at each step, there have been limited attempts toward improving the sequential decision-making policy. Existing strategies rely on either the expensive and high-variance value estimation by online rollout, or a settled value estimation neural network pre-trained with simulated pathways of limited diversity and no negative feedback. Besides, how to return multiple candidate pathways that are not only diverse but also desirable for chemists (e.g., affordable building block materials) remains an open challenge. To this end, we propose a Goal-dRiven Actor-critic retroSynthetic Planning (GRASP) framework, where we identify the policy that performs goal-driven retrosynthesis navigation toward a user-demand objective. Our experiments on the benchmark Pistachio dataset and a chemists-designed dataset demonstrate that the framework outperforms existing state-of-the-art approaches by up to 32.2% on search efficiency and 5.6% on quality. Remarkably, our user studies show that GRASP successfully plans pathways that accomplish the goal prescribed with a goal (building block materials). © 2022 Neural l Information Processing Syste Foundation. All rights reserved.
Original languageEnglish
Title of host publication36th Conference on Neural Information Processing Systems (NeurIPS 2022)
EditorsS. Koyejo, S. Mohamed, A. Agarwal, D. Belgrave, K. Cho, A. Oh
PublisherNeural Information Processing Systems (NeurIPS)
ISBN (Print)9781713871088
Publication statusPublished - Nov 2022
Event36th Conference on Neural Information Processing Systems (NeurIPS 2022) - Hybrid, New Orleans Convention Center, New Orleans, United States
Duration: 28 Nov 20229 Dec 2022
https://neurips.cc/
https://nips.cc/Conferences/2022
https://proceedings.neurips.cc/paper_files/paper/2022

Publication series

NameAdvances in Neural Information Processing Systems
Volume35
ISSN (Print)1049-5258

Conference

Conference36th Conference on Neural Information Processing Systems (NeurIPS 2022)
Abbreviated titleNIPS '22
PlaceUnited States
CityNew Orleans
Period28/11/229/12/22
Internet address

Bibliographical note

Research Unit(s) information for this publication is provided by the author(s) concerned.

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