Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae

Tianhong Zhou; Kai Chen; Hai-Xin Zhang; Xin Deng

doi:10.1016/j.gdata.2015.04.012

Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae

Tianhong Zhou, Kai Chen, Hai-Xin Zhang, Xin Deng^*

^*Corresponding author for this work

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

6 Citations (Scopus)

10 Downloads (CityUHK Scholars)

Abstract

Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available from NCBI Gene Expression Omnibus (GEO) with the accession number GSE58533. Here we describe the detailed methods and data analyses of our RhpR ChIP-seq dataset.

Original language	English
Pages (from-to)	146-147
Journal	Genomics Data
Volume	4
Online published	20 Apr 2015
DOIs	https://doi.org/10.1016/j.gdata.2015.04.012
Publication status	Published - Jun 2015
Externally published	Yes

Research Keywords

ChIP-seq
Pseudomonas syringae
Two-component system

Publisher's Copyright Statement

This full text is made available under CC-BY-NC-ND 4.0. https://creativecommons.org/licenses/by-nc-nd/4.0/

Access Output

10.1016/j.gdata.2015.04.012

15337024.pdfFinal Published version, 170 KBLicence: CC BY-NC-ND

Other Access Options

Check CityUHK Library

Permanent Link

Right click to copy link

Cite this

@article{c27ea64765eb4baa84aa20388dcc4ec4,

title = "Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae",

abstract = "Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available from NCBI Gene Expression Omnibus (GEO) with the accession number GSE58533. Here we describe the detailed methods and data analyses of our RhpR ChIP-seq dataset.",

keywords = "ChIP-seq, Pseudomonas syringae, Two-component system",

author = "Tianhong Zhou and Kai Chen and Hai-Xin Zhang and Xin Deng",

year = "2015",

month = jun,

doi = "10.1016/j.gdata.2015.04.012",

language = "English",

volume = "4",

pages = "146--147",

journal = "Genomics Data",

issn = "2213-5960",

publisher = "Elsevier Inc.",

}

TY - JOUR

T1 - Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae

AU - Zhou, Tianhong

AU - Chen, Kai

AU - Zhang, Hai-Xin

AU - Deng, Xin

PY - 2015/6

Y1 - 2015/6

N2 - Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available from NCBI Gene Expression Omnibus (GEO) with the accession number GSE58533. Here we describe the detailed methods and data analyses of our RhpR ChIP-seq dataset.

AB - Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available from NCBI Gene Expression Omnibus (GEO) with the accession number GSE58533. Here we describe the detailed methods and data analyses of our RhpR ChIP-seq dataset.

KW - ChIP-seq

KW - Pseudomonas syringae

KW - Two-component system

UR - http://www.scopus.com/inward/record.url?scp=84929400923&partnerID=8YFLogxK

UR - https://www.scopus.com/record/pubmetrics.uri?eid=2-s2.0-84929400923&origin=recordpage

U2 - 10.1016/j.gdata.2015.04.012

DO - 10.1016/j.gdata.2015.04.012

M3 - RGC 21 - Publication in refereed journal

C2 - 26484202

SN - 2213-5960

VL - 4

SP - 146

EP - 147

JO - Genomics Data

JF - Genomics Data

ER -

Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae

Abstract

Research Keywords

Publisher's Copyright Statement

Access Output

Other Access Options

Permanent Link

Other Files and Links

Fingerprint

Cite this