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Erasable and Field Programmable DNA Circuits Based on Configurable Logic Blocks

  • Yizhou Liu
  • , Yuxuan Zhai
  • , Hao Hu
  • , Yuheng Liao
  • , Huan Liu
  • , Xiao Liu
  • , Jiachen He
  • , Limei Wang
  • , Hongxun Wang
  • , Longjie Li*
  • , Xiaoyu Zhou*
  • , Xianjin Xiao*
  • *Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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Abstract

DNA is commonly employed as a substrate for the building of artificial logic networks due to its excellent biocompatibility and programmability. Till now, DNA logic circuits are rapidly evolving to accomplish advanced operations. Nonetheless, nowadays, most DNA circuits remain to be disposable and lack of field programmability and thereby limits their practicability. Herein, inspired by the Configurable Logic Block (CLB), the CLB-based erasable field-programmable DNA circuit that uses clip strands as its operation-controlling signals is presented. It enables users to realize diverse functions with limited hardware. CLB-based basic logic gates (OR and AND) are first constructed and demonstrated their erasability and field programmability. Furthermore, by adding the appropriate operation-controlling strands, multiple rounds of programming are achieved among five different logic operations on a two-layer circuit. Subsequently, a circuit is successfully built to implement two fundamental binary calculators: half-adder and half-subtractor, proving that the design can imitate silicon-based binary circuits. Finally, a comprehensive CLB-based circuit is built that enables multiple rounds of switch among seven different logic operations including half-adding and half-subtracting. Overall, the CLB-based erasable field-programmable circuit immensely enhances their practicability. It is believed that design can be widely used in DNA logic networks due to its efficiency and convenience. © 2024 The Authors. Advanced Science published by Wiley-VCH GmbH.

Original languageEnglish
Article number2400011
JournalAdvanced Science
Volume11
Issue number26
Online published2 May 2024
DOIs
Publication statusPublished - 10 Jul 2024
Externally publishedYes

Funding

This work was financially supported by the National Key Research and Development Program (Nos. 2023YFE0210200 and 2021YFC2701402), the interdisciplinary research program of HUST Science Park, the open research fund of the Hunan Provincial Key Laboratory of Regional Hereditary Birth Defects Prevention and Control (Nos. HPKL2023019, HPKL2023036), Research and Innovation Initiatives of WHPU (No. 2023Y15), the Hong Kong Innovation and Technology Fund, the Mainland\u2010Hong Kong Joint Funding Scheme (Platform) (No. MHP/240/23), the Hetao Shenzhen\u2010Hong Kong Science and Technology Innovation Cooperation Zone Shenzhen Park Project (No. HZQB\u2010KCZYZ\u20102021017), the National Key Research and Development Program of China (No. 2018YFA0901104), and the Central Government\u2010guided Special Funds for Local Scientific and Technological Development (No. 226Z2603G).

Research Keywords

  • clip-mediated strand displacement reaction
  • configurable logic block
  • DNA logic circuits
  • DNA nanotechnology
  • field programming

Publisher's Copyright Statement

  • This full text is made available under CC-BY 4.0. https://creativecommons.org/licenses/by/4.0/

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