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Development of a coarse-grained α-chitin model on the basis of MARTINI forcefield

Zechuan Yu, Denvid Lau*

*Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

Abstract

At nanoscale, atomistic simulation is widely used for investigating crystalline chitin fibers, the structural component for many biological materials. However, the longitudinal dimension of naturally occurring chitin fibers exceeds hundreds of nanometer, beyond the investigation range of all-atom simulation due to the limitation of computational power. Under this context, coarse-grained simulation is a useful alternative that facilitates the investigation of a large system. We develop a coarse-grained model for describing the structural and mechanical properties of α-chitin. The developed coarse-grained model can reasonably predict these properties. Moreover, this model is consistent with existing coarse-grained force fields for proteins. The present model of α-chitin possesses good potential and applicability in the investigation of natural chitin-based materials at the length scale of several hundred nanometers.
Original languageEnglish
Article number128
JournalJournal of Molecular Modeling
Volume21
Issue number5
Online published26 Apr 2015
DOIs
Publication statusPublished - May 2015

Research Keywords

  • Coarse-grained model
  • MARTINI forcefield
  • Molecular dynamics
  • α-chitin

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