Abstract
Tandem repeats, which occur frequently in genomes, are related to gene regulatory functions and various diseases. In this paper, an efficient algorithm for tandem repeat detection is proposed. In our method, the spectrogram of a DNA sequence is analyzed based on the autoregressive model. Then, significant peaks in the spectrogram are selected, and the corresponding regions in the DNA sequence are analyzed to search for tandem repeats. Experiment results show that our method has a superior performance in comparison with other algorithms. © 2009 IEEE.
| Original language | English |
|---|---|
| Pages (from-to) | 747-755 |
| Journal | IEEE Transactions on Information Technology in Biomedicine |
| Volume | 13 |
| Issue number | 5 |
| DOIs | |
| Publication status | Published - 2009 |
Research Keywords
- Autoregressive (AR) model
- DNA sequence analysis
- Spectral analysis
- Tandem repeats
Fingerprint
Dive into the research topics of 'Detection of tandem repeats in DNA sequences based on parametric spectral estimation'. Together they form a unique fingerprint.Cite this
- APA
- Author
- BIBTEX
- Harvard
- Standard
- RIS
- Vancouver