De novo transcriptome assembly of the marine gastropod Reishia clavigera for supporting toxic mechanism studies

Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

3 Scopus Citations
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Author(s)

  • Jack C.H. Ip
  • Priscilla T.Y. Leung
  • Kevin K.Y. Ho
  • J. W. Qiu
  • Kenneth M.Y. Leung

Detail(s)

Original languageEnglish
Pages (from-to)39-48
Journal / PublicationAquatic Toxicology
Volume178
Early online date15 Jul 2016
Publication statusPublished - Sep 2016

Abstract

The intertidal whelk Reishia clavigera is commonly used as a biomonitor of chemical contamination in the marine environment along Western Pacific region, and as a model for mechanistic studies of organotin-mediated imposex development. However, limited genomic resources of R. clavigera have restricted its role for the investigation of molecular mechanisms of such endocrine disruptions. This study, therefore, aimed to establish tissue-specific transcriptomes of the digestive gland, gonad, head ganglia, penis and the remaining body part of the male and female R. clavigera. By combining the results, a global transcriptome was obtained. A total of 578,134,720 high-quality filtered reads were obtained using Illumina sequencing. The R. clavigera transcriptome comprised of 38,466 transcripts and 32,798 unigenes with predicted open reading frames. The average length of transcripts was 1,709 bp with N50 of 2,236 bp. Based on sequence similarity searches against public databases, 28,657 transcripts and 24,403 unigenes had at least one BLAST hit. There were 17,530 transcripts and 14,897 unigenes annotated with at least one Gene Ontology (GO) term. Moreover, 5,776 transcripts and 5,137 unigenes were associated with 333 Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways. The numbers of unigenes were similar among the five target tissues and between sexes, but tissue-specific expression profiles were revealed by multivariate analyses. Based on the functional annotation, putative steroid hormone-associated unigenes were identified. In particular, we highlighted the presence of steroid hormone receptor homologues that could be the targets for mechanistic studies of the organotin-mediated imposex development in marine gastropods. This newly generated transcriptome assembly of R. clavigera provides a valuable molecular resource for ecotoxicological and environmental genomic studies.

Research Area(s)

  • Endocrine disruption, Nuclear receptor, Organotin, Thais clavigera, Transcriptomic

Citation Format(s)

De novo transcriptome assembly of the marine gastropod Reishia clavigera for supporting toxic mechanism studies. / Ip, Jack C.H.; Leung, Priscilla T.Y.; Ho, Kevin K.Y.; Qiu, J. W.; Leung, Kenneth M.Y.

In: Aquatic Toxicology, Vol. 178, 09.2016, p. 39-48.

Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review