Computing parametric alignment of RNA structures : Visualization and practice
Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
Author(s)
Related Research Unit(s)
Detail(s)
| Original language | English |
|---|---|
| Title of host publication | Proceedings - 2011 International Conference on Future Computer Sciences and Application, ICFCSA 2011 |
| Pages | 16-18 |
| Publication status | Published - 2011 |
Conference
| Title | 2011 International Conference on Future Computer Sciences and Application, ICFCSA 2011 |
|---|---|
| Place | China |
| City | Hong Kong |
| Period | 18 - 19 June 2011 |
Link(s)
Abstract
Alignment of RNA structures is very important in biological research. Similar to pair-wise sequence alignment, there is often disagreement about how to weight matches, mismatches, indels and gaps when comparing two RNA structures. Here, we develop a visual tool for computing parametric alignment of two RNA structures. With this tool, users can see explicitly and completely the effect of parameter choices on the optimal alignments of RNA structures. The software is available for academic use (http://www.cs.cityu.edu.hk/~lwang/ software/ParaRNA/). © 2011 IEEE.
Research Area(s)
- Parametric alignment, RNA structures
Citation Format(s)
Computing parametric alignment of RNA structures: Visualization and practice. / Feng, Wangsen; Zhang, Bei; Wang, Lusheng.
Proceedings - 2011 International Conference on Future Computer Sciences and Application, ICFCSA 2011. 2011. p. 16-18 5968016.
Proceedings - 2011 International Conference on Future Computer Sciences and Application, ICFCSA 2011. 2011. p. 16-18 5968016.
Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
