Center and distinguisher for strings with unbounded alphabet

Xiaotie Deng, Guojun Li, Lusheng Wang

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

6 Citations (Scopus)

Abstract

Consider two sets B and G of strings of length L with characters from an unbounded alphabet Σ, i.e., the size of Σ is not bounded by a constant and has to be taken into consideration as a parameter for input size. A closest string s* of B is a string that minimizes the maximum of Hamming1 distance(s, s*) over all string s : s ∈ B. In contrast, a farthest string t* from G maximizes the minimum of Hamming distance(t*, t) over all elements t : t ∈ G. A distinguisher of B from G is a string that is close to every string in B and far away from any string in G. We obtain polynomial time approximation schemes to settle the above problems.
Original languageEnglish
Pages (from-to)383-400
JournalJournal of Combinatorial Optimization
Volume6
Issue number4
DOIs
Publication statusPublished - Dec 2002

Research Keywords

  • Approximation algorithm
  • Center string selection
  • Computational molecular biology
  • Distinguishing string selection
  • Unbounded alphabet size

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