Attention-Based MultiOffset Deep Learning Reconstruction of Chemical Exchange Saturation Transfer (AMO-CEST) MRI

Zhikai Yang, Dinggang Shen, Kannie W. Y. Chan*, Jianpan Huang*

*Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

11 Citations (Scopus)

Abstract

One challenge of chemical exchange saturation transfer (CEST) magnetic resonance imaging (MRI) is the long scan time due to multiple acquisitions of images at different saturation frequency offsets. k-space under-sampling strategy is commonly used to accelerate MRI acquisition, while this could introduce artifacts and reduce signal-to-noise ratio (SNR). To accelerate CEST-MRI acquisition while maintaining suitable image quality, we proposed an attention-based multioffset deep learning reconstruction network (AMO-CEST) with a multiple radial k-space sampling strategy for CEST-MRI. The AMO-CEST also contains dilated convolution to enlarge the receptive field and data consistency module to preserve the sampled k-space data. We evaluated the proposed method on a mouse brain dataset containing 5760 CEST images acquired at a pre-clinical 3T MRI scanner. Quantitative results demonstrated that AMO-CEST showed obvious improvement over zero-filling method with a PSNR enhancement of 11 dB, a SSIM enhancement of 0.15, and a NMSE decrease of 4.37 × 10−2 in three acquisition orientations. Compared with other deep learning-based models, AMO-CEST showed visual and quantitative improvements in images from three different orientations. We also extracted molecular contrast maps, including the amide proton transfer (APT) and the relayed nuclear Overhauser enhancement (rNOE). The results demonstrated that the CEST contrast maps derived from the CEST images of AMO-CEST were comparable to those derived from the original high-resolution CEST images. The proposed AMO-CEST can efficiently reconstruct high-quality CEST images from under-sampled k-space data and thus has the potential to accelerate CEST-MRI acquisition. © 2024 IEEE.
Original languageEnglish
Pages (from-to)4636-4647
JournalIEEE Journal of Biomedical and Health Informatics
Volume28
Issue number8
Online published22 May 2024
DOIs
Publication statusPublished - Aug 2024

Funding

Authors would like to acknowledge the funding supports from Research Grants Council (11102218, 11200422, RFS2223-1S02, C1134-20G), City University of Hong Kong (7005433, 7005626, 9609307, 9610560 and 9610616), National Natural Science Foundation of China (81871409), Tung Biomedical Sciences Centre, Hong Kong Centre for Cerebrocardiovascular Health Engineering, and The University of Hong Kong (109000487, 204610401 and 204610519).

Research Keywords

  • Atrous Spatial Pyramid Pooling
  • Channel-Wise Attention
  • Chemical Exchange Saturation Transfer
  • Chemicals
  • Convolution
  • Data Consistency
  • Deep learning
  • Image reconstruction
  • Magnetic resonance imaging
  • MRI Reconstruction
  • Protons
  • Vectors

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