Application of Machine Learning in Nanotoxicology: A Critical Review and Perspective

Yunchi Zhou, Ying Wang*, Willie Peijnenburg, Martina G. Vijver, Surendra Balraadjsing, Zhaomin Dong, Xiaoli Zhao, Kenneth M. Y. Leung, Holly M. Mortensen, Zhenyu Wang, Iseult Lynch, Antreas Afantitis, Yunsong Mu, Fengchang Wu, Wenhong Fan*

*Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

22 Citations (Scopus)

Abstract

The massive production and application of nanomaterials (NMs) have raised concerns about the potential adverse effects of NMs on human health and the environment. Evaluating the adverse effects of NMs by laboratory methods is expensive, time-consuming, and often fails to keep pace with the invention of new materials. Therefore, in silico methods that utilize machine learning techniques to predict the toxicity potentials of NMs are a promising alternative approach if regulatory confidence in them can be enhanced. Previous reviews and regulatory OECD guidance documents have discussed in detail how to build an in silico predictive model for NMs. Nevertheless, there is still room for improvement in addressing the ways to enhance the model representativeness and performance from different angles, such as data set curation, descriptor selection, task type (classification/regression), algorithm choice, and model evaluation (internal and external validation, applicability domain, and mechanistic interpretation, which is key to ensuring stakeholder confidence). This review explores how to build better predictive models; the current state of the art is analyzed via a statistical evaluation of literature, while the challenges faced and future perspectives are summarized. Moreover, a recommended workflow and best practices are provided to help in developing more predictive, reliable, and interpretable models that can assist risk assessment as well as safe-by-design development of NMs. © 2024 American Chemical Society.
Original languageEnglish
Pages (from-to)14973-14993
JournalEnvironmental Science & Technology
Volume58
Issue number34
Online published7 Aug 2024
DOIs
Publication statusPublished - 27 Aug 2024

Funding

This work was supported by the National Natural Science Foundation of China (No. 42330710 and 42177240), the National Key R&D Program of China (No. 2022YFC3204800), and the Fundamental Research Funds for the Central Universities. The authors of University Leiden (MGV, WJGMP, SB) are paid by ERC Consolidator grant EcoWizard (Grant Agreement No. 101002123). IL and AA acknowledge Horizon 2020 Marie Skłodowska-Curie Actions project CompSafeNano (Grant Agreement No. 101008099). KMYL acknowledges the support of Innovation and Technology Commission (ITC) of the Hong Kong SAR Government to the State Key Laboratory of Marine Pollution (City University of Hong Kong) (No. 9448002).

Research Keywords

  • algorithm
  • classification/regression
  • computational toxicity
  • machine learning
  • nanomaterials
  • prediction

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