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An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15

Yanjing Wang, Xiangeng Wang, Yi Xiong, Cheng-Dong Li, Qin Xu, Lu Shen, Aman Chandra Kaushik*, Dong-Qing Wei*

*Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

39 Downloads (CityUHK Scholars)

Abstract

G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural ligand demonstrated an ability to inhibit cancer cell growth. However, no study reported the potential role of GPR15 in a pan-cancer manner. Using large-scale publicly available data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases, we found that GPR15 expression is significantly lower in colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ) than in normal tissues. Among 33 cancer types, GPR15 expression was significantly positively correlated with the prognoses of COAD, neck squamous carcinoma (HNSC), and lung adenocarcinoma (LUAD) and significantly negatively correlated with stomach adenocarcinoma (STAD). This study also revealed that commonly upregulated gene sets in the high GPR15 expression group (stratified via median) of COAD, HNSC, LUAD, and STAD are enriched in immune systems, indicating that GPR15 might be considered as a potential target for cancer immunotherapy. Furthermore, we modelled the 3D structure of GPR15 and conducted structure-based virtual screening. The top eight hit compounds were screened and then subjected to molecular dynamics (MD) simulation for stability analysis. Our study provides novel insights into the role of GPR15 in a pan-cancer manner and discovered a potential hit compound for GPR15 antagonists.

Original languageEnglish
Article number6226
Number of pages23
JournalInternational Journal of Molecular Sciences
Volume20
Issue number24
Online published10 Dec 2019
DOIs
Publication statusPublished - Dec 2019
Externally publishedYes

Funding

This work was supported by the funding from National Key Research Program (Contract No.2016YFA0501703), National Natural Science Foundation of China (Grant No. 31601074, 61872094, 61832019), and Shanghai Jiao Tong University School of Medicine (Contract No. YG2017ZD14).

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Research Keywords

  • Orphan receptor GPR15
  • BOB
  • pan-cancer
  • TCGA
  • cancer immunity
  • differential gene expression
  • prognosis
  • virtual screening
  • PROTEIN-COUPLED RECEPTORS
  • GENE-EXPRESSION
  • WEB SERVER
  • FORCE-FIELD
  • R PACKAGE
  • PROLIFERATION
  • INVOLVEMENT
  • PREDICTION
  • INTESTINE
  • INSIGHTS

Publisher's Copyright Statement

  • This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.

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