Abstract
G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural ligand demonstrated an ability to inhibit cancer cell growth. However, no study reported the potential role of GPR15 in a pan-cancer manner. Using large-scale publicly available data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases, we found that GPR15 expression is significantly lower in colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ) than in normal tissues. Among 33 cancer types, GPR15 expression was significantly positively correlated with the prognoses of COAD, neck squamous carcinoma (HNSC), and lung adenocarcinoma (LUAD) and significantly negatively correlated with stomach adenocarcinoma (STAD). This study also revealed that commonly upregulated gene sets in the high GPR15 expression group (stratified via median) of COAD, HNSC, LUAD, and STAD are enriched in immune systems, indicating that GPR15 might be considered as a potential target for cancer immunotherapy. Furthermore, we modelled the 3D structure of GPR15 and conducted structure-based virtual screening. The top eight hit compounds were screened and then subjected to molecular dynamics (MD) simulation for stability analysis. Our study provides novel insights into the role of GPR15 in a pan-cancer manner and discovered a potential hit compound for GPR15 antagonists.
| Original language | English |
|---|---|
| Article number | 6226 |
| Number of pages | 23 |
| Journal | International Journal of Molecular Sciences |
| Volume | 20 |
| Issue number | 24 |
| Online published | 10 Dec 2019 |
| DOIs | |
| Publication status | Published - Dec 2019 |
| Externally published | Yes |
Funding
This work was supported by the funding from National Key Research Program (Contract No.2016YFA0501703), National Natural Science Foundation of China (Grant No. 31601074, 61872094, 61832019), and Shanghai Jiao Tong University School of Medicine (Contract No. YG2017ZD14).
UN SDGs
This output contributes to the following UN Sustainable Development Goals (SDGs)
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SDG 3 Good Health and Well-being
Research Keywords
- Orphan receptor GPR15
- BOB
- pan-cancer
- TCGA
- cancer immunity
- differential gene expression
- prognosis
- virtual screening
- PROTEIN-COUPLED RECEPTORS
- GENE-EXPRESSION
- WEB SERVER
- FORCE-FIELD
- R PACKAGE
- PROLIFERATION
- INVOLVEMENT
- PREDICTION
- INTESTINE
- INSIGHTS
Publisher's Copyright Statement
- This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
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