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AI in drug discovery and its clinical relevance

Rizwan Qureshi*, Muhammad Irfan, Taimoor Gondal, Sheheryar Khan, Jia Wu, Muhammad Usman Hadi, John Heymach, Xiuning Le, Hong Yan, Tanvir Alam*

*Corresponding author for this work

Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

103 Downloads (CityUHK Scholars)

Abstract

The COVID-19 pandemic has emphasized the need for novel drug discovery process. However, the journey from conceptualizing a drug to its eventual implementation in clinical settings is a long, complex, and expensive process, with many potential points of failure. Over the past decade, a vast growth in medical information has coincided with advances in computational hardware (cloud computing, GPUs, and TPUs) and the rise of deep learning. Medical data generated from large molecular screening profiles, personal health or pathology records, and public health organizations could benefit from analysis by Artificial Intelligence (AI) approaches to speed up and prevent failures in the drug discovery pipeline. We present applications of AI at various stages of drug discovery pipelines, including the inherently computational approaches of de novo design and prediction of a drug’s likely properties. Open-source databases and AI-based software tools that facilitate drug design are discussed along with their associated problems of molecule representation, data collection, complexity, labeling, and disparities among labels. How contemporary AI methods, such as graph neural networks, reinforcement learning, and generated models, along with structure-based methods, (i.e., molecular dynamics simulations and molecular docking) can contribute to drug discovery applications and analysis of drug responses is also explored. Finally, recent developments and investments in AI-based start-up companies for biotechnology, drug design and their current progress, hopes and promotions are discussed in this article. © 2023 The Author(s). Published by Elsevier Ltd.
Original languageEnglish
Article numbere17575
Number of pages23
JournalHeliyon
Volume9
Issue number7
Online published26 Jun 2023
DOIs
Publication statusPublished - Jul 2023

Funding

This work is supported by Hong Kong Innovation and Technology Commission (InnoHK Project CIMDA), Hong Kong Research Grants Council (Project 11204821), College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar, and Qatar National Research Fund (QNRF) Grant TDF 03-1206-210011 and RRC02-0805-210019 to Tanvir Alam.

Research Keywords

  • Artificial intelligence
  • Graph neural networks
  • Drug discovery
  • Molecular dynamics simulation
  • Biotechnology and bioengineering
  • Biotechnology
  • Molecule representation
  • Reinforcement learning

Publisher's Copyright Statement

  • This full text is made available under CC-BY 4.0. https://creativecommons.org/licenses/by/4.0/

RGC Funding Information

  • RGC-funded

Policy Impact

  • Cited in Policy Documents

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