A Hitchhiker's guide through the bio-image analysis software universe
Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Author(s)
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Detail(s)
Original language | English |
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Pages (from-to) | 2472-2485 |
Journal / Publication | FEBS Letters |
Volume | 596 |
Issue number | 19 |
Online published | 14 Jul 2022 |
Publication status | Published - Oct 2022 |
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DOI | DOI |
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Attachment(s) | Documents
Publisher's Copyright Statement
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Link to Scopus | https://www.scopus.com/record/display.uri?eid=2-s2.0-85135105071&origin=recordpage |
Permanent Link | https://scholars.cityu.edu.hk/en/publications/publication(b62a47db-42c3-4a78-be6a-4bb0cc14ae87).html |
Abstract
Modern research in the life sciences is unthinkable without computational methods for extracting, quantifying and visualising information derived from microscopy imaging data of biological samples. In the past decade, we observed a dramatic increase in available software packages for these purposes. As it is increasingly difficult to keep track of the number of available image analysis platforms, tool collections, components and emerging technologies, we provide a conservative overview of software that we use in daily routine and give insights into emerging new tools. We give guidance on which aspects to consider when choosing the platform that best suits the user's needs, including aspects such as image data type, skills of the team, infrastructure and community at the institute and availability of time and budget.
Research Area(s)
- bio-image analysis, open-source, software
Citation Format(s)
A Hitchhiker's guide through the bio-image analysis software universe. / Haase, Robert; Fazeli, Elnaz; Legland, David et al.
In: FEBS Letters, Vol. 596, No. 19, 10.2022, p. 2472-2485.
In: FEBS Letters, Vol. 596, No. 19, 10.2022, p. 2472-2485.
Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
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