A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

Jun Yu; Songnian Hu; Jun Wang; Gane Ka-Shu Wong; Songgang Li; Bin Liu; Yajun Deng; Li Dai; Yan Zhou; Xiuqing Zhang; Mengliang Cao; Jing Liu; Jiandong Sun; Jiabin Tang; Yanjiong Chen; Xiaobing Huang; Wei Lin; Chen Ye; Wei Tong; Lijuan Cong; Jianing Geng; Yujun Han; Lin Li; Wei Li; Guangqiang Hu; Xiangang Huang; Wenjie Li; Jian Li; Zhanwei Liu; Long Li; Jianping Liu; Qiuhui Qi; Jinsong Liu; Li Li; Tao Li; Xuegang Wang; Hong Lu; Tingting Wu; Miao Zhu; Peixiang Ni; Hua Han; Wei Dong; Xiaoyu Ren; Xiaoli Feng; Peng Cui; Xianran Li; Hao Wang; Xin Xu; Wenxue Zhai; Zhao Xu; Jinsong Zhang; Sijie He; Jianguo Zhang; Jichen Xu; Kunlin Zhang; Xianwu Zheng; Jianhai Dong; Wanyong Zeng; Lin Tao; Jia Ye; Jun Tan; Xide Ren; Xuewei Chen; Jun He; Daofeng Liu; Wei Tian; Chaoguang Tian; Hongai Xia; Qiyu Bao; Gang Li; Hui Gao; Ting Cao; Juan Wang; Wenming Zhao; Ping Li; Wei Chen; Xudong Wang; Yong Zhang; Jianfei Hu; Jing Wang; Song Liu; Jian Yang; Guangyu Zhang; Yuqing Xiong; Zhijie Li; Long Mao; Chengshu Zhou; Zhen Zhu; Runsheng Chen; Bailin Hao; Weimou Zheng; Shouyi Chen; Wei Guo; Guojie Li; Siqi Liu; Ming Tao; Jian Wang; Lihuang Zhu; Longping Yuan; Huanming Yang

doi:10.1126/science.1068037

Author(s)

Jun Yu
Songnian Hu
Jun Wang
Gane Ka-Shu Wong
Songgang Li
And 95 others

Bin Liu
Yajun Deng
Li Dai
Yan Zhou
Xiuqing Zhang
Mengliang Cao
Jing Liu
Jiandong Sun
Jiabin Tang
Yanjiong Chen
Xiaobing Huang
Wei Lin
Chen Ye
Wei Tong
Lijuan Cong
Jianing Geng
Yujun Han
Lin Li
Wei Li
Guangqiang Hu
Xiangang Huang
Wenjie Li
Jian Li
Zhanwei Liu
Long Li
Jianping Liu
Qiuhui Qi
Jinsong Liu
Li Li
Tao Li
Xuegang Wang
Hong Lu
Tingting Wu
Miao Zhu
Peixiang Ni
Hua Han
Wei Dong
Xiaoyu Ren
Xiaoli Feng
Peng Cui
Xianran Li
Hao Wang
Xin Xu
Wenxue Zhai
Zhao Xu
Jinsong Zhang
Sijie He
Jianguo Zhang
Jichen Xu
Kunlin Zhang
Xianwu Zheng
Jianhai Dong
Wanyong Zeng
Lin Tao
Jia Ye
Jun Tan
Xide Ren
Xuewei Chen
Jun He
Daofeng Liu
Wei Tian
Chaoguang Tian
Hongai Xia
Qiyu Bao
Gang Li
Hui Gao
Ting Cao
Juan Wang
Wenming Zhao
Ping Li
Wei Chen
Xudong Wang
Yong Zhang
Jianfei Hu
Jing Wang
Song Liu
Jian Yang
Guangyu Zhang
Yuqing Xiong
Zhijie Li
Long Mao
Chengshu Zhou
Zhen Zhu
Runsheng Chen
Bailin Hao
Weimou Zheng
Shouyi Chen
Wei Guo
Guojie Li
Siqi Liu
Ming Tao
Jian Wang
Lihuang Zhu
Longping Yuan
Huanming Yang

Detail(s)

Original language	English
Pages (from-to)	79-92
Journal / Publication	Science
Volume	296
Issue number	5565
Publication status	Published - 5 Apr 2002
Externally published	Yes

Link(s)

DOI	DOI https://doi.org/10.1126/science.1068037 Final Published version
	Check@CityULib
Link to Scopus	https://www.scopus.com/record/display.uri?eid=2-s2.0-0037023384&origin=recordpage
Permanent Link	https://scholars.cityu.edu.hk/en/publications/publication(6e035958-eb6d-4afe-b9b2-b33b2598a02d).html

Abstract

We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp.indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

Citation Format(s)

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A draft sequence of the rice genome (Oryza sativa L. ssp. indica). / Yu, Jun; Hu, Songnian; Wang, Jun; Wong, Gane Ka-Shu; Li, Songgang; Liu, Bin; Deng, Yajun; Dai, Li; Zhou, Yan; Zhang, Xiuqing; Cao, Mengliang; Liu, Jing; Sun, Jiandong; Tang, Jiabin; Chen, Yanjiong; Huang, Xiaobing; Lin, Wei; Ye, Chen; Tong, Wei; Cong, Lijuan; Geng, Jianing; Han, Yujun; Li, Lin; Li, Wei; Hu, Guangqiang; Huang, Xiangang; Li, Wenjie; Li, Jian; Liu, Zhanwei; Li, Long; Liu, Jianping; Qi, Qiuhui; Liu, Jinsong; Li, Li; Li, Tao; Wang, Xuegang; Lu, Hong; Wu, Tingting; Zhu, Miao; Ni, Peixiang; Han, Hua; Dong, Wei; Ren, Xiaoyu; Feng, Xiaoli; Cui, Peng; Li, Xianran; Wang, Hao; Xu, Xin; Zhai, Wenxue; Xu, Zhao; Zhang, Jinsong; He, Sijie; Zhang, Jianguo; Xu, Jichen; Zhang, Kunlin; Zheng, Xianwu; Dong, Jianhai; Zeng, Wanyong; Tao, Lin; Ye, Jia; Tan, Jun; Ren, Xide; Chen, Xuewei; He, Jun; Liu, Daofeng; Tian, Wei; Tian, Chaoguang; Xia, Hongai; Bao, Qiyu; Li, Gang; Gao, Hui; Cao, Ting; Wang, Juan; Zhao, Wenming; Li, Ping; Chen, Wei; Wang, Xudong; Zhang, Yong; Hu, Jianfei; Wang, Jing; Liu, Song; Yang, Jian; Zhang, Guangyu; Xiong, Yuqing; Li, Zhijie; Mao, Long; Zhou, Chengshu; Zhu, Zhen; Chen, Runsheng; Hao, Bailin; Zheng, Weimou; Chen, Shouyi; Guo, Wei; Li, Guojie; Liu, Siqi; Tao, Ming; Wang, Jian; Zhu, Lihuang; Yuan, Longping; Yang, Huanming.

In: Science, Vol. 296, No. 5565, 05.04.2002, p. 79-92.

Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

Yu, J, Hu, S, Wang, J, Wong, GK-S, Li, S, Liu, B, Deng, Y, Dai, L, Zhou, Y, Zhang, X, Cao, M, Liu, J, Sun, J, Tang, J, Chen, Y, Huang, X, Lin, W, Ye, C, Tong, W, Cong, L, Geng, J, Han, Y, Li, L, Li, W, Hu, G, Huang, X, Li, W, Li, J, Liu, Z, Li, L, Liu, J, Qi, Q, Liu, J, Li, L, Li, T, Wang, X, Lu, H, Wu, T, Zhu, M, Ni, P, Han, H, Dong, W, Ren, X, Feng, X, Cui, P, Li, X, Wang, H, Xu, X, Zhai, W, Xu, Z, Zhang, J, He, S, Zhang, J, Xu, J, Zhang, K, Zheng, X, Dong, J, Zeng, W, Tao, L, Ye, J, Tan, J, Ren, X, Chen, X, He, J, Liu, D, Tian, W, Tian, C, Xia, H, Bao, Q, Li, G, Gao, H, Cao, T, Wang, J, Zhao, W, Li, P, Chen, W, Wang, X, Zhang, Y, Hu, J, Wang, J, Liu, S, Yang, J, Zhang, G, Xiong, Y, Li, Z, Mao, L, Zhou, C, Zhu, Z, Chen, R, Hao, B, Zheng, W, Chen, S, Guo, W, Li, G, Liu, S, Tao, M, Wang, J, Zhu, L, Yuan, L & Yang, H 2002, 'A draft sequence of the rice genome (Oryza sativa L. ssp. indica)', Science, vol. 296, no. 5565, pp. 79-92. https://doi.org/10.1126/science.1068037

Yu, J., Hu, S., Wang, J., Wong, G. K-S., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., Cao, M., Liu, J., Sun, J., Tang, J., Chen, Y., Huang, X., Lin, W., Ye, C., Tong, W., ... Yang, H. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 296(5565), 79-92. https://doi.org/10.1126/science.1068037

Yu J, Hu S, Wang J, Wong GK-S, Li S, Liu B et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science. 2002 Apr 5;296(5565):79-92. https://doi.org/10.1126/science.1068037

Yu, Jun ; Hu, Songnian ; Wang, Jun ; Wong, Gane Ka-Shu ; Li, Songgang ; Liu, Bin ; Deng, Yajun ; Dai, Li ; Zhou, Yan ; Zhang, Xiuqing ; Cao, Mengliang ; Liu, Jing ; Sun, Jiandong ; Tang, Jiabin ; Chen, Yanjiong ; Huang, Xiaobing ; Lin, Wei ; Ye, Chen ; Tong, Wei ; Cong, Lijuan ; Geng, Jianing ; Han, Yujun ; Li, Lin ; Li, Wei ; Hu, Guangqiang ; Huang, Xiangang ; Li, Wenjie ; Li, Jian ; Liu, Zhanwei ; Li, Long ; Liu, Jianping ; Qi, Qiuhui ; Liu, Jinsong ; Li, Li ; Li, Tao ; Wang, Xuegang ; Lu, Hong ; Wu, Tingting ; Zhu, Miao ; Ni, Peixiang ; Han, Hua ; Dong, Wei ; Ren, Xiaoyu ; Feng, Xiaoli ; Cui, Peng ; Li, Xianran ; Wang, Hao ; Xu, Xin ; Zhai, Wenxue ; Xu, Zhao ; Zhang, Jinsong ; He, Sijie ; Zhang, Jianguo ; Xu, Jichen ; Zhang, Kunlin ; Zheng, Xianwu ; Dong, Jianhai ; Zeng, Wanyong ; Tao, Lin ; Ye, Jia ; Tan, Jun ; Ren, Xide ; Chen, Xuewei ; He, Jun ; Liu, Daofeng ; Tian, Wei ; Tian, Chaoguang ; Xia, Hongai ; Bao, Qiyu ; Li, Gang ; Gao, Hui ; Cao, Ting ; Wang, Juan ; Zhao, Wenming ; Li, Ping ; Chen, Wei ; Wang, Xudong ; Zhang, Yong ; Hu, Jianfei ; Wang, Jing ; Liu, Song ; Yang, Jian ; Zhang, Guangyu ; Xiong, Yuqing ; Li, Zhijie ; Mao, Long ; Zhou, Chengshu ; Zhu, Zhen ; Chen, Runsheng ; Hao, Bailin ; Zheng, Weimou ; Chen, Shouyi ; Guo, Wei ; Li, Guojie ; Liu, Siqi ; Tao, Ming ; Wang, Jian ; Zhu, Lihuang ; Yuan, Longping ; Yang, Huanming. / A draft sequence of the rice genome (Oryza sativa L. ssp. indica). In: Science. 2002 ; Vol. 296, No. 5565. pp. 79-92.

A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

Author(s)

Detail(s)

Link(s)

DOI

Abstract

Citation Format(s)