A draft sequence of the rice genome (Oryza sativa L. ssp. indica)

Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journal

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Author(s)

  • Jun Yu
  • Songnian Hu
  • Jun Wang
  • Gane Ka-Shu Wong
  • Songgang Li
  • And 95 others
  • Bin Liu
  • Yajun Deng
  • Li Dai
  • Yan Zhou
  • Xiuqing Zhang
  • Mengliang Cao
  • Jing Liu
  • Jiandong Sun
  • Jiabin Tang
  • Yanjiong Chen
  • Xiaobing Huang
  • Wei Lin
  • Chen Ye
  • Wei Tong
  • Lijuan Cong
  • Jianing Geng
  • Yujun Han
  • Lin Li
  • Wei Li
  • Guangqiang Hu
  • Xiangang Huang
  • Wenjie Li
  • Jian Li
  • Zhanwei Liu
  • Long Li
  • Jianping Liu
  • Qiuhui Qi
  • Jinsong Liu
  • Li Li
  • Tao Li
  • Xuegang Wang
  • Hong Lu
  • Tingting Wu
  • Miao Zhu
  • Peixiang Ni
  • Hua Han
  • Wei Dong
  • Xiaoyu Ren
  • Xiaoli Feng
  • Peng Cui
  • Xianran Li
  • Hao Wang
  • Xin Xu
  • Wenxue Zhai
  • Zhao Xu
  • Jinsong Zhang
  • Sijie He
  • Jianguo Zhang
  • Jichen Xu
  • Kunlin Zhang
  • Xianwu Zheng
  • Jianhai Dong
  • Wanyong Zeng
  • Lin Tao
  • Jia Ye
  • Jun Tan
  • Xide Ren
  • Xuewei Chen
  • Jun He
  • Daofeng Liu
  • Wei Tian
  • Chaoguang Tian
  • Hongai Xia
  • Qiyu Bao
  • Gang Li
  • Hui Gao
  • Ting Cao
  • Juan Wang
  • Wenming Zhao
  • Ping Li
  • Wei Chen
  • Xudong Wang
  • Yong Zhang
  • Jianfei Hu
  • Jing Wang
  • Song Liu
  • Jian Yang
  • Guangyu Zhang
  • Yuqing Xiong
  • Zhijie Li
  • Long Mao
  • Chengshu Zhou
  • Zhen Zhu
  • Runsheng Chen
  • Bailin Hao
  • Weimou Zheng
  • Shouyi Chen
  • Wei Guo
  • Guojie Li
  • Siqi Liu
  • Ming Tao
  • Jian Wang
  • Lihuang Zhu
  • Longping Yuan
  • Huanming Yang

Detail(s)

Original languageEnglish
Pages (from-to)79-92
Journal / PublicationScience
Volume296
Issue number5565
Publication statusPublished - 5 Apr 2002
Externally publishedYes

Abstract

We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp.indica, by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

Citation Format(s)

A draft sequence of the rice genome (Oryza sativa L. ssp. indica). / Yu, Jun; Hu, Songnian; Wang, Jun; Wong, Gane Ka-Shu; Li, Songgang; Liu, Bin; Deng, Yajun; Dai, Li; Zhou, Yan; Zhang, Xiuqing; Cao, Mengliang; Liu, Jing; Sun, Jiandong; Tang, Jiabin; Chen, Yanjiong; Huang, Xiaobing; Lin, Wei; Ye, Chen; Tong, Wei; Cong, Lijuan; Geng, Jianing; Han, Yujun; Li, Lin; Li, Wei; Hu, Guangqiang; Huang, Xiangang; Li, Wenjie; Li, Jian; Liu, Zhanwei; Li, Long; Liu, Jianping; Qi, Qiuhui; Liu, Jinsong; Li, Li; Li, Tao; Wang, Xuegang; Lu, Hong; Wu, Tingting; Zhu, Miao; Ni, Peixiang; Han, Hua; Dong, Wei; Ren, Xiaoyu; Feng, Xiaoli; Cui, Peng; Li, Xianran; Wang, Hao; Xu, Xin; Zhai, Wenxue; Xu, Zhao; Zhang, Jinsong; He, Sijie; Zhang, Jianguo; Xu, Jichen; Zhang, Kunlin; Zheng, Xianwu; Dong, Jianhai; Zeng, Wanyong; Tao, Lin; Ye, Jia; Tan, Jun; Ren, Xide; Chen, Xuewei; He, Jun; Liu, Daofeng; Tian, Wei; Tian, Chaoguang; Xia, Hongai; Bao, Qiyu; Li, Gang; Gao, Hui; Cao, Ting; Wang, Juan; Zhao, Wenming; Li, Ping; Chen, Wei; Wang, Xudong; Zhang, Yong; Hu, Jianfei; Wang, Jing; Liu, Song; Yang, Jian; Zhang, Guangyu; Xiong, Yuqing; Li, Zhijie; Mao, Long; Zhou, Chengshu; Zhu, Zhen; Chen, Runsheng; Hao, Bailin; Zheng, Weimou; Chen, Shouyi; Guo, Wei; Li, Guojie; Liu, Siqi; Tao, Ming; Wang, Jian; Zhu, Lihuang; Yuan, Longping; Yang, Huanming.

In: Science, Vol. 296, No. 5565, 05.04.2002, p. 79-92.

Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journal