FANG Xiaodong (方晓東)

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Research Output

  1. 2022
  2. Published

    Altered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity

    Han, L., Zhao, L., Zhou, Y., Yang, C., Xiong, T., Lu, L., Deng, Y., & 19 othersLuo, W., Chen, Y., Qiu, Q., Shang, X., Huang, L., Mo, Z., Huang, S., Huang, S., Liu, Z., Yang, W., Zhai, L., Ning, Z., Lin, C., Huang, T., Cheng, C., Zhong, L. L. D., Li, S., Bian, Z. & Fang, X., Apr 2022, In: ISME Journal. 16, 4, p. 983-996

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 9
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  3. 2020
  4. Published

    A comprehensive investigation of metagenome assembly by linked-read sequencing

    Zhang, L., Fang, X., Liao, H., Zhang, Z., Zhou, X., Han, L., Chen, Y., & 2 othersQiu, Q. & Li, S. C., 2020, In: Microbiome. 8, 156.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
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  5. Published

    Donkey genomes provide new insights into domestication and selection for coat color

    Wang, C., Li, H., Guo, Y., Huang, J., Sun, Y., Min, J., Wang, J., & 43 othersFang, X., Zhao, Z., Wang, S., Zhang, Y., Liu, Q., Jiang, Q., Wang, X., Guo, Y., Yang, C., Wang, Y., Tian, F., Zhuang, G., Fan, Y., Gao, Q., Li, Y., Ju, Z., Li, J., Li, R., Hou, M., Yang, G., Liu, G., Liu, W., Guo, J., Pan, S., Fan, G., Zhang, W., Zhang, R., Yu, J., Zhang, X., Yin, Q., Ji, C., Jin, Y., Yue, G., Liu, M., Xu, J., Liu, S., Jordana, J., Noce, A., Amills, M., Wu, D. D., Li, S., Zhou, X. & Zhong, J., 2020, In: Nature Communications. 11, 6014.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 26
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  6. 2019
  7. Published

    A draft genome assembly of the solar-powered sea slug Elysia chlorotica

    Cai, H., Li, Q., Fang, X., Li, J., Curtis, N. E., Altenburger, A., Shibata, T., & 11 othersFeng, M., Maeda, T., Schwartz, J. A., Shigenobu, S., Lundholm, N., Nishiyama, T., Yang, H., Hasebe, M., Li, S., Pierce, S. K. & Wang, J., 2019, In: Scientific data. 6, 190022.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 25
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  8. 2018
  9. Published

    Coding mutations in NUS1 contribute to Parkinson's disease

    Guo, J., Zhang, L., Li, K., Mei, J., Xue, J., Chen, J., Tang, X., & 33 othersShen, L., Jiang, H., Chen, C., Guo, H., Wu, X., Sun, S., Xu, Q., Sun, Q., Chan, P., Shang, H., Wang, T., Zhao, G., Liu, J., Xie, X., Jiang, Y., Liu, Z., Zhao, Y., Zhu, Z., Li, J., Hu, Z., Yan, X., Fang, X., Wang, G., Zhang, F., Xia, K., Liu, C., Zhu, X., Yue, Z., Li, S. C., Cai, H., Zhang, Z., Duan, R. & Tang, B., 6 Nov 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 45, p. 11567-11572

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 60
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  10. Online published

    Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater

    Zhou, X., Guang, X., Sun, D., Xu, S., Li, M., Seim, I., Jie, W., & 14 othersYang, L., Zhu, Q., Xu, J., Gao, Q., Kaya, A., Dou, Q., Chen, B., Ren, W., Li, S., Zhou, K., Gladyshev, V. N., Nielsen, R., Fang, X. & Yang, G., 10 Apr 2018, (Online published) In: Nature Communications. 9, 1276.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 69
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  11. 2017
  12. Published

    Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory

    Fukushima, K., Fang, X., Alvarez-Ponce, D., Cai, H., Carretero-Paulet, L., Chen, C., Chang, T., & 26 othersFarr, K. M., Fujita, T., Hiwatashi, Y., Hoshi, Y., Imai, T., Kasahara, M., Librado, P., Mao, L., Mori, H., Nishiyama, T., Nozawa, M., Pálfalvi, G., Pollard, S. T., Rozas, J., Sánchez-Gracia, A., Sankoff, D., Shibata, T. F., Shigenobu, S., Sumikawa, N., Uzawa, T., Xie, M., Zheng, C., Pollock, D. D., Albert, V. A., Li, S. & Hasebe, M., 6 Feb 2017, In: Nature Ecology and Evolution. 1, 3, 0059.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 70
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  13. Published

    Eliminating heterozygosity from reads through coverage normalization

    Zhao, Z., Ng, Y. K., Fang, X. & Li, S., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Tian, T., Jiang, Q., Liu, Y., Burrage, K., Song, J., Wang, Y., Hu, Morishita, S., Zhu, Q. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 174-177 7822514. (IEEE International Conference on Bioinformatics and Biomedicine-BIBM).

    Research output: Chapters, Conference Papers, Creative and Literary Works (RGC: 12, 32, 41, 45) › 32_Refereed conference paper (with ISBN/ISSN) › peer-review

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  14. 2015
  15. Published

    Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies

    Li, X., Fan, D., Zhang, W., Liu, G., Zhang, L., Zhao, L., Fang, X., & 17 othersChen, L., Dong, Y., Chen, Y., Ding, Y., Zhao, R., Feng, M., Zhu, Y., Feng, Y., Jiang, X., Zhu, D., Xiang, H., Feng, X., Li, S., Wang, J., Zhang, G., Kronforst, M. R. & Wang, W., 10 Sep 2015, In: Nature Communications. 6, 8212.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 129
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  16. Published

    Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax (Nature Communications (2015) 5 (3966) DOI 10.1038/ncomms4966)

    53 authors, including, 5. A. I., Fang, X., Zhang, L. & Li, S., 12 Aug 2015, In: Nature Communications. 6, 8051.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › Erratum

    Scopus citations: 2
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  17. Published

    Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism

    Hu, Z., Zhu, D., Wang, W., Li, W., Jia, W., Zeng, X., Ding, W., & 29 othersYu, L., Wang, X., Wang, L., Shen, H., Zhang, C., Liu, H., Liu, X., Zhao, Y., Fang, X., Li, S., Chen, W., Tang, T., Fu, A., Wang, Z., Chen, G., Gao, Q., Li, S., Xi, L., Wang, C., Liao, S., Ma, X., Wu, P., Li, K., Wang, S., Zhou, J., Wang, J., Xu, X., Wang, H. & Ma, D., 2015, In: Nature Genetics. 47, 2, p. 158-163

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 288
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  18. 2014
  19. Published

    Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

    Qin, C., Yu, C., Shen, Y., Fang, X., Chen, L., Min, J., Cheng, J., & 66 othersZhao, S., Xu, M., Luo, Y., Yang, Y., Wu, Z., Mao, L., Wu, H., Changying, L., Zhou, H., Lin, H., González-Morales, S., Trejo-Saavedra, D. L., Tian, H., Tang, X., Zhao, M., Huang, Z., Zhou, A., Yao, X., Cui, J., Li, W., Chen, Z., Feng, Y., Niu, Y., Bi, S., Yang, X., Li, W., Cai, H., Luo, X., Montes-Hernández, S., Leyva-González, M. A., Xiong, Z., He, X., Bai, L., Tan, S., Tang, X., Liu, D., Liu, J., Zhang, S., Chen, M., Zhang, L., Zhang, L., Zhang, Y., Liao, W., Zhang, Y., Wang, M., Lv, X., Wen, B., Liu, H., Luan, H., Zhang, Y., Yang, S., Wang, X., Xu, J., Li, X., Li, S., Wang, J., Palloix, A., Bosland, P. W., Li, Y., Krogh, A., Rivera-Bustamante, R. F., Herrera-Estrella, L., Yin, Y., Yu, J., Hu, K. & Zhang, Z., 8 Apr 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 14, p. 5135-5140

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 499
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  20. Published

    Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

    53 authors, including, 5. A. I., Fang, X., Zhang, L. & Li, S., 2014, In: Nature Communications. 5, 3966.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 106
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  21. 2008

  22. The diploid genome sequence of an Asian individual

    Wang, J., Wang, W., Li, R., Li, Y., Tian, G., Goodman, L., Fan, W., & 70 othersZhang, J., Li, J., Zhang, J., Guo, Y., Feng, B., Li, H., Lu, Y., Fang, X., Liang, H., Du, Z., Li, D., Zhao, Y., Hu, Y., Yang, Z., Zheng, H., Hellmann, I., Inouye, M., Pool, J., Yi, X., Zhao, J., Duan, J., Zhou, Y., Qin, J., Ma, L., Li, G., Yang, Z., Zhang, G., Yang, B., Yu, C., Liang, F., Li, W., Li, S., Li, D., Ni, P., Ruan, J., Li, Q., Zhu, H., Liu, D., Lu, Z., Li, N., Guo, G., Zhang, J., Ye, J., Fang, L., Hao, Q., Chen, Q., Liang, Y., Su, Y., San, A., Ping, C., Yang, S., Chen, F., Li, L., Zhou, K., Zheng, H., Ren, Y., Yang, L., Gao, Y., Yang, G., Li, Z., Feng, X., Kristiansen, K., Wong, G. K., Nielsen, R., Durbin, R., Bolund, L., Zhang, X., Li, S., Yang, H. & Wang, J., 6 Nov 2008, In: Nature. 456, 7218, p. 60-65

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 736
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