Personal profile
Author IDs
ORCID iD: 0000-0002-0590-6608
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations from the last five years
Research output
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Deep learning-driven TCRβ repertoire analysis enhances diagnosis and enables mining of immunological biomarkers in systemic lupus erythematosus
Shen, T. (Co-first Author), Sheng, Y. (Co-first Author), Nie, W., Yang, S., Li, K., Ma, Z., Ling, Z., Tan, B., Feng, X. & Huo, M., 2025, In: BioData Mining. 18, 21 p., 76.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile2 Downloads (CityUHK Scholars) -
DeepTAPE: Enhancing Systemic Lupus Erythematosus Diagnosis with Deep Learning Based on TCRβ CDR3 Sequences
Shen, T. (Co-first Author), Huo, M. (Co-first Author), Nie, W., Li, K., Ma, Z., Feng, X. & Li, S. C., 10 Jan 2025, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Cannataro, M., Zheng, H., Gao, L., Cheng, J., de Miranda, J. L., Zumpano, E., Hu, X., Cho, Y.-R. & Park, T. (eds.). IEEE, p. 1149-1154Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
1 Link opens in a new tab Citation (Scopus) -
Inferring causal trajectories from spatial transcriptomics using CASCAT
Yu, Y. (Co-first Author), Nie, W. (Co-first Author), Zhang, Q. & Li, S. C., 28 Aug 2025, In: Nucleic acids research. 53, 15, 15 p., gkaf791.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile3 Downloads (CityUHK Scholars) -
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
Lu, T. (Co-first Author), Wang, X. (Co-first Author), Nie, W., Huo, M. & LI, S., 2025, In: GigaScience. 14Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile2 Link opens in a new tab Citations (Scopus)15 Downloads (CityUHK Scholars) -
Conversion mechanism of the atomically precise group IB metal nanoclusters by theoretical calculations
Lv, Y., Nie, W., Yu, H. & Zhu, M., Sept 2024, In: CHEMICAL PHYSICS REVIEWS. 5, 3, 031306.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile10 Downloads (CityUHK Scholars)
Datasets
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Supporting data for "TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection"
LU, T. (Creator), WANG, X. (Creator), NIE, W. (Creator), HUO, M. (Creator) & LI, S. (Creator), GigaScience Press, 17 Dec 2024
DOI: 10.5524/102633
Dataset
Prizes
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Institutional Research Tuition Scholarship
NIE, W. (Recipient), 1 Sept 2023
Prize: RGC 64B - Prizes and awards
Thesis
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Deep Graph Learning for Analyzing Interactions in Chemical and Biological Systems
NIE, W. (Author), Fu, Y. (External Supervisor) & LI, S. (Supervisor), 28 Feb 2025Student thesis: Doctoral Thesis