Research output per year
Research output per year
Research output
- 19 results
Search results
-
2024
MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm
Liu, Z., Wong, H.-M., Chen, X., Lin, J., Zhang, S., Yan, S., Wang, F., Li, X. & Wong, K.-C., Jan 2024, In: Computers in Biology and Medicine. 168, 107753.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
2 Citations (Scopus) -
2023
Review of single-cell RNA-seq data clustering for cell-type identification and characterization
ZHANG, S., LI, X., LIN, J., LIN, Q. & WONG, K.-C., May 2023, In: RNA. 29, 5, p. 517-530Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile40 Citations (Scopus)94 Downloads (CityUHK Scholars) -
Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA
Yu, Z., Su, Y., Lu, Y., Yang, Y., Wang, F., Zhang, S., Chang, Y., Wong, K.-C. & Li, X., 2023, In: Nature Communications. 14, 400.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile34 Citations (Scopus)59 Downloads (CityUHK Scholars) -
2022
DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifs
Lin, J., Huang, L., Chen, X., Zhang, S. & Wong, K.-C., Jan 2022, In: Briefings in Bioinformatics. 23, 1, 9 p., bbab334.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
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High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning
Li, X., Li, S., Huang, L., Zhang, S. & Wong, K.-C., Jan 2022, In: Briefings in Bioinformatics. 23, 1, bbab368.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
8 Citations (Scopus) -
2021
Deep embedded clustering with multiple objectives on scRNA-seq data
Li, X., Zhang, S. & Wong, K.-C., Sept 2021, In: Briefings in Bioinformatics. 22, 5, bbab090.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
9 Citations (Scopus) -
Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing
Yu, Z., Bian, C., Liu, G., Zhang, S., Wong, K.-C. & Li, X., Sept 2021, In: Briefings in Bioinformatics. 22, 5, bbab125.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
8 Citations (Scopus) -
Evolving Transcriptomic Profiles from Single-Cell RNA-Seq Data Using Nature-Inspired Multiobjective Optimization
Li, X., Zhang, S. & Wong, K.-C., Nov 2021, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 18, 6, p. 2445-2458Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
2 Citations (Scopus) -
Feature Selection and Feature Extraction: Highlights
Wong, H.-M., Chen, X., Tam, H.-H., Lin, J., Zhang, S., Yan, S., Li, X. & Wong, K.-C., 2021, ISMSI 2021: 2021 5th International Conference on Intelligent Systems, Metaheuristics and Swarm Intelligence. Association for Computing Machinery, p. 49-53 (ACM International Conference Proceeding Series).Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
7 Citations (Scopus) -
Identification of pan-cancer Ras pathway activation with deep learning
Li, X., Li, S., Wang, Y., Zhang, S. & Wong, K.-C., Jul 2021, In: Briefings in Bioinformatics. 22, 4, bbaa258.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
10 Citations (Scopus) -
Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data
Li, X., Zhang, S. & Wong, K.-C., Dec 2021, In: IEEE Transactions on Cybernetics. 51, 12, p. 5811-5824Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
8 Citations (Scopus) -
Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements
Zhang, S., Li, X., Lin, Q. & Wong, K.-C., Sept 2021, In: IEEE Transactions on Cybernetics. 51, 9, p. 4476-4487Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
6 Citations (Scopus) -
2020
CRISPR‐Net: A Recurrent Convolutional Network Quantifies CRISPR Off‐Target Activities with Mismatches and Indels
Lin, J., Zhang, Z., Zhang, S., Chen, J. & Wong, K.-C., Jul 2020, In: Advanced Science. 7, 13, p. 1903562Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile52 Citations (Scopus)100 Downloads (CityUHK Scholars) -
Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies
Li, X., Zhang, S. & Wong, K.-C., Jan 2020, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 17, 1, p. 226-237Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
28 Citations (Scopus) -
Uncovering the key dimensions of high-throughput biomolecular data using deep learning
Zhang, S., Li, X., Lin, Q., Lin, J. & Wong, K.-C., 4 Jun 2020, In: Nucleic Acids Research. 48, 10, p. e56Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile11 Citations (Scopus)102 Downloads (CityUHK Scholars) -
2019
Early Cancer Detection from Multianalyte Blood Test Results
Wong, K.-C., Chen, J., Zhang, J., Lin, J., Yan, S., Zhang, S., Li, X., Liang, C., Peng, C., Lin, Q., Kwong, S. & Yu, J., 31 May 2019, In: iScience. 15, p. 332-341 9 p.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile25 Citations (Scopus)78 Downloads (CityUHK Scholars) -
Single-cell RNA-seq interpretations using evolutionary multiobjective ensemble pruning
Li, X., Zhang, S. & Wong, K.-C., 15 Aug 2019, In: Bioinformatics. 35, 16, p. 2809-2817 9 p.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open Access26 Citations (Scopus) -
Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications
Zhang, S., Li, X., Lin, Q. & Wong, K.-C., 1 Apr 2019, In: Bioinformatics. 35, 7, p. 1108-1115Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open Access29 Citations (Scopus) -
2018
Two-factor high-order fuzzy-trend FTS model based on BSO-FCM and improved KA for TAIEX stock forecasting
Zhang, W., Zhang, S. & Zhang, S., Oct 2018, In: Nonlinear Dynamics. 94, 2, p. 1429-1446Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
10 Citations (Scopus)