Prof. LI Shuaicheng (李帥成)

Research Output

  1. 2016
  2. Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma

    Cheng, C., Zhou, Y., Li, H., Xiong, T., Li, S., Bi, Y. & Kong, P. & 48 others, Wang, F., Cui, H., Li, Y., Fang, X., Yan, T., Li, Y., Wang, J., Yang, B., Zhang, L., Jia, Z., Song, B., Hu, X., Yang, J., Qiu, H., Zhang, G., Liu, J., Xu, E., Shi, R., Zhang, Y., Liu, H., He, C., Zhao, Z., Qian, Y., Rong, R., Han, Z., Zhang, Y., Luo, W., Wang, J., Peng, S., Yang, X., Li, X., Li, L., Fang, H., Liu, X., Ma, L., Chen, Y., Guo, S., Chen, X., Xi, Y., Li, G., Liang, J., Yang, X., Guo, J., Jia, J., Li, Q., Cheng, X., Zhan, Q. & Cui, Y., 4 Feb 2016, In: American Journal of Human Genetics. 98, 2, p. 256-274

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 111
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  3. 2015
  4. Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

    Karr, J. R., Williams, A. H., Zucker, J. D., Raue, A., Steiert, B., Timmer, J. & Kreutz, C. & 47 others, Hu, Y., Baron, M., Bryson, K., Barker, B., Bogart, E., Wang, Y., Chandramohan, D., Huang, L., Zawack, K., Shestov, A. A., Makadia, H., DeCicco, D., Yin, A., Wang, M., Li, S. C., Swistak, M., Cygan, M., Kazakiewicz, D., Kursa, M. B., Korytkowski, P., Plewczynski, D., Yang, J., Li, Y., Tang, H., Wang, T., Liu, Y., Xie, Y., Xiao, G., Bello, J., Botero Rozo, D. O., Cañas-Duarte, S. J., Castro, J. C., Gomez, F., Valdes, I., Vivas, L. G., Bernal, A., Pedraza Leal, J. M., Restrepo, S., Muñoz, A. R., Wilkinson, S., Allgood, B. A., Bot, B. M., Hoff, B. R., Kellen, M. R., Covert, M. W., Stolovitzky, G. A. & Meyer, P., 1 May 2015, In: PLoS Computational Biology. 11, 5, e1004096.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 29
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  5. 2012
  6. Residues with similar hexagon neighborhoods share similar side-chain conformations

    Li, S. C., Bu, D. & Li, M., 2012, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 9, 1, p. 240-248 5753883.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  7. 2011
  8. Pedigree Reconstruction Using Identity by Descent

    KIRKPATRICK, B., LI, S. C., KARP, R. M. & HALPERIN, E., Nov 2011, In: Journal of Computational Biology. 18, 11, p. 1481-1493

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 23
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  9. On protein structure alignment under distance constraint

    Li, S. C. & Ng, Y. K., 22 Jul 2011, In: Theoretical Computer Science. 412, 32, p. 4187-4199

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
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  10. Finding nearly optimal GDT scores

    Li, S. C., Bu, D., Xu, J. & Li, M., 1 May 2011, In: Journal of Computational Biology. 18, 5, p. 693-704

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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  11. Incorporating Ab Initio energy into threading approaches for protein structure prediction

    Shao, M., Wang, S., Wang, C., Yuan, X., Li, S. C., Zheng, W. & Bu, D., 15 Feb 2011, In: BMC Bioinformatics. 12, SUPPL. 1, S54.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  12. Error tolerant nmr backbone resonance assignment and automated structure generation

    Alipanahi, B., Gao, X., Karakoc, E., Li, S. C., Balbach, F., Feng, G. & Donaldson, L. & 1 others, Li, M., Feb 2011, In: Journal of Bioinformatics and Computational Biology. 9, 1, p. 15-41

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 22
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  13. Pedigree Reconstruction Using Identity by Descent

    Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 2011, Research in Computational Molecular Biology: 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 136-152 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. LNBI 6577).

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

    Scopus citations: 8
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  14. 2010
  15. Protein secondary structure prediction using NMR chemical shift data

    Zhao, Y., Alipanahi, B., Li, S. C. & Li, M., Oct 2010, In: Journal of Bioinformatics and Computational Biology. 8, 5, p. 867-884

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 18
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  16. Calibur: A tool for clustering large numbers of protein decoys

    Li, S. C. & Ng, Y. K., 13 Jan 2010, In: BMC Bioinformatics. 11, 25.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 61
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  17. 2009
  18. On Protein Structure Alignment under Distance Constraint

    Li, S. C. & Ng, Y. K., Dec 2009, Algorithms and Computation: 20th International Symposium, ISAAC 2009, Proceedings. Dong, Y., Du, D.-Z. & Ibarra, O. (eds.). Springer Verlag, Vol. 5878 LNCS. p. 65-76 (Lecture Notes in Computer Science; vol. 5878).

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

    Scopus citations: 10
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  19. Finding compact structural motifs

    Bu, D., Li, M., Li, S. C., Qian, J. & Xu, J., 20 Aug 2009, In: Theoretical Computer Science. 410, 30-32, p. 2834-2839

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  20. On two open problems of 2-interval patterns

    Li, S. C. & Li, M., 28 May 2009, In: Theoretical Computer Science. 410, 24-25, p. 2410-2423

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
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  21. Predicting local quality of a sequence-structure alignment

    Gao, X., Xu, J., Li, S. C. & Li, M., 2009, In: Journal of Bioinformatics and Computational Biology. 7, 5, p. 789-810

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  22. 2008
  23. A PTAS for the k-consensus structures problem under squared Euclidean distance

    Li, S. C., Ng, Y. K. & Zhang, L., Dec 2008, In: Algorithms. 1, 2, p. 43-51

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  24. Fragment-HMM: A new approach to protein structure prediction

    Shuai, C. L., Bu, D., Xu, J. & Li, M., Nov 2008, In: Protein Science. 17, 11, p. 1925-1934

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 51
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  25. Discriminative learning for protein conformation sampling

    Zhao, F., Li, S., Sterner, B. W. & Xu, J., Oct 2008, In: Proteins: Structure, Function and Genetics. 73, 1, p. 228-240

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 35
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  26. Designing succinct structural alphabets

    Li, S. C., Bu, D., Gao, X., Xu, J. & Li, M., Jul 2008, In: Bioinformatics. 24, 13

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 10
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  27. Consensus Approaches to Protein Structure Prediction

    Bu, D., Li, S., Gao, X., Yu, L., Xu, J. & Li, M., 21 Apr 2008, Machine Learning in Bioinformatics. John Wiley & Sons, Inc., p. 189-208

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 12 - Chapter in an edited book (Author)peer-review

    Scopus citations: 1
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