Prof. LI Shuaicheng (李帥成)

Research Output

  1. 2020
  2. Published

    A comprehensive investigation of metagenome assembly by linked-read sequencing

    Zhang, L., Fang, X., Liao, H., Zhang, Z., Zhou, X., Han, L. & Chen, Y. & 2 others, Qiu, Q. & Li, S. C., 2020, In: Microbiome. 8, 156.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 13
    Check@CityULib
  3. Published

    Breastfeeding restored the gut microbiota in caesarean section infants and lowered the infection risk in early life

    Guo, C., Zhou, Q., Li, M., Zhou, L., Xu, L., Zhang, Y. & Li, D. & 4 others, Wang, Y., Dai, W., Li, S. & Zhang, L., 2020, In: BMC Pediatrics. 20, 532.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 23
    Check@CityULib
  4. Published

    Deep learning for HGT insertion sites recognition

    Li, C., Chen, J. & Li, S. C., 2020, In: BMC Genomics. 21, Supplement 11, 893.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
    Check@CityULib
  5. Published

    Donkey genomes provide new insights into domestication and selection for coat color

    Wang, C., Li, H., Guo, Y., Huang, J., Sun, Y., Min, J. & Wang, J. & 43 others, Fang, X., Zhao, Z., Wang, S., Zhang, Y., Liu, Q., Jiang, Q., Wang, X., Guo, Y., Yang, C., Wang, Y., Tian, F., Zhuang, G., Fan, Y., Gao, Q., Li, Y., Ju, Z., Li, J., Li, R., Hou, M., Yang, G., Liu, G., Liu, W., Guo, J., Pan, S., Fan, G., Zhang, W., Zhang, R., Yu, J., Zhang, X., Yin, Q., Ji, C., Jin, Y., Yue, G., Liu, M., Xu, J., Liu, S., Jordana, J., Noce, A., Amills, M., Wu, D. D., Li, S., Zhou, X. & Zhong, J., 2020, In: Nature Communications. 11, 6014.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 66
    Check@CityULib
  6. Published

    Establishing high-accuracy biomarkers for colorectal cancer by comparing fecal microbiomes in patients with healthy families

    Yang, J., Li, D., Yang, Z., Dai, W., Feng, X., Liu, Y. & Jiang, Y. & 17 others, Li, P., Li, Y., Tang, B., Zhou, Q., Qiu, C., Zhang, C., Xu, X., Feng, S., Wang, D., Wang, H., Wang, W., Zheng, Y., Zhang, L., Wang, W., Zhou, K., Li, S. & Yu, P., 2020, In: Gut Microbes. 11, 4, p. 918-929

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 47
    Check@CityULib
  7. Published

    Heterogeneity of immune microenvironment in ovarian cancer and its clinical significance: a retrospective study

    Gao, Y., Chen, L., Cai, G., Xiong, X., Wu, Y., Ma, D. & Li, S. C. & 1 others, Gao, Q., 2020, In: OncoImmunology. 9, 1, e1760067.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 31
    Check@CityULib
  8. Published

    I-Impute: a self-consistent method to impute single cell RNA sequencing data

    Feng, X., Chen, L., Wang, Z. & Li, S. C., 2020, In: BMC Genomics. 21, Suppl. 10, 618.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 7
    Check@CityULib
  9. Published

    LDscaff: LD-based scaffolding of de novo genome assemblies

    Zhao, Z., Zhou, Y., Wang, S., Zhang, X., Wang, C. & Li, S., 2020, In: BMC Bioinformatics. 21, Suppl 21, 570.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
    Check@CityULib
  10. Published

    Understanding Horizontal Gene Transfer network in human gut microbiota

    Li, C., Chen, J. & Li, S. C., 2020, In: Gut Pathogens. 12, 33.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 19
    Check@CityULib
  11. 2019
  12. Published

    Analysis and comparison of long non-coding RNAs expressed in the ovaries of Meishan and Yorkshire pigs

    Wang, Z., Yang, Y., Li, S., Li, K. & Tang, Z., Dec 2019, In: Animal Genetics. 50, 6, p. 660-669

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
    Check@CityULib
  13. Published

    Resilience of human gut microbial communities for the long stay with multiple dietary shifts

    Liu, H., Han, M., Li, S. C., Tan, G., Sun, S., Hu, Z. & Yang, P. & 13 others, Wang, R., Liu, Y., Chen, F., Peng, J., Peng, H., Song, H., Xia, Y., Chu, L., Zhou, Q., Guan, F., Wu, J., Bu, D. & Ning, K., Dec 2019, In: Gut. 68, 12, p. 2254-2255

    Research output: Journal Publications and ReviewsLetterpeer-review

    Scopus citations: 40
    Check@CityULib
  14. Published
    Check@CityULib
  15. Published

    Intestinal Bacteroides sp. Imbalance Associated With the Occurrence of Childhood Undernutrition in China

    Li, D., Li, Y., Dai, W., Wang, H., Qiu, C., Feng, S. & Zhou, Q. & 10 others, Wang, W., Feng, X., Yao, K., Liu, Y., Yang, Y., Yang, Z., Xu, X., Li, S., Wei, J. & Zhou, K., Nov 2019, In: Frontiers in Microbiology. 10, 2635.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 10
    Check@CityULib
  16. Published

    LysoPhD: predicting functional prophages in bacterial genomes from high-throughput sequencing

    Niu, Q., Peng, S.-L., Zhang, X.-L.-L., Li, S.-C., Xu, Y., Xie, X.-C. & Tong, Y.-G., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine. Yoo, I., Bi, J. & Hu, X. (eds.). Institute of Electrical and Electronics Engineers, Inc., p. 288-292 8983280. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine-BIBM).

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

    Scopus citations: 1
    Check@CityULib
  17. Published

    D-GPM: A Deep Learning Method for Gene Promoter Methylation Inference

    Pan, X., Liu, B., Wen, X., Liu, Y., Zhang, X., Li, S. & Li, S., Oct 2019, In: Genes. 10, 10, 807.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 10
    Check@CityULib
  18. Published

    Distinct Gut Microbiota Composition and Functional Category in Children With Cerebral Palsy and Epilepsy

    Huang, C., Li, Y., Feng, X., Li, D., Li, X., Ouyang, Q. & Dai, W. & 7 others, Wu, G., Zhou, Q., Wang, P., Zhou, K., Xu, X., Li, S. & Peng, Y., Oct 2019, In: Frontiers in Pediatrics. 7, 394.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 51
    Check@CityULib
  19. Published

    DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning

    Liu, B., Liu, Y., Pan, X., Li, M., Yang, S. & Li, S. C., Oct 2019, In: Genes. 10, 10, 778.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 63
    Check@CityULib
  20. Published

    SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes

    Wang, Z., Feng, X. & Li, S. C., Sept 2019, In: Frontiers in Genetics. 10, 903.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
    Check@CityULib
  21. Published

    An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia

    Dai, W., Wang, H., Zhou, Q., Li, D., Feng, X., Yang, Z. & Wang, W. & 15 others, Qiu, C., Lu, Z., Xu, X., Lyu, M., Xie, G., Li, Y., Bao, Y., Liu, Y., Shen, K., Yao, K., Feng, X., Yang, Y., Zhou, K., Li, S. & Zheng, Y., Aug 2019, In: GigaScience. 8, 8, 14 p., giz093.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 19
    Check@CityULib
  22. Published

    Genome-Wide Investigation and Functional Analysis of Sus scrofa RNA Editing Sites across Eleven Tissues

    Wang, Z., Feng, X., Tang, Z. & Li, S. C., Jul 2019, In: Genes. 10, 7, 520.

    Research output: Journal Publications and ReviewsComment/debate

    Scopus citations: 1
    Check@CityULib