Prof. LI Shuaicheng (李帥成)

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Research Output

  1. 2025
  2. Accepted/In press/Filed

    TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection

    LU, T., Wang, X., Nie, W., Huo, M. & LI, S., 21 Jan 2025, (Accepted/In press/Filed) In: GigaScience.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  3. Published

    DeepTAPE: Enhancing Systemic Lupus Erythematosus Diagnosis with Deep Learning Based on TCRβ CDR3 Sequences

    Shen, T., Huo, M., Nie, W., Li, K., Ma, Z., Feng, X. & Li, S. C., 10 Jan 2025, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Cannataro, M., Zheng, H., Gao, L., Cheng, J., de Miranda, J. L., Zumpano, E., Hu, X., Cho, Y.-R. & Park, T. (eds.). Institute of Electrical and Electronics Engineers, Inc., p. 1149-1154

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

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  4. Published

    Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome

    Li, Y., Pan, G., Wang, S., Li, Z., Yang, R., Jiang, Y. & Chen, Y. & 2 others, Li, S. C. & Shen, B., Jan 2025, In: Briefings in Bioinformatics. 26, 1, bbae620.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  5. 2024
  6. Published

    Identifying T-cell clubs by embracing the local harmony between TCR and gene expressions

    Zou, Y., Luo, J., Chen, L., Wang, X., Liu, W., Wang, R. H. & Li, S. C., Dec 2024, In: Molecular Systems Biology. 20, 12, p. 1329-1345

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  7. Online published

    Spatially Informed Graph Structure Learning Extracts Insights from Spatial Transcriptomics

    Nie, W., Yu, Y., Wang, X., Wang, R. & Li, S. C., 9 Oct 2024, (Online published) In: Advanced Science. 2403572.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  8. Published

    SuperTAD-Fast: Accelerating Topologically Associating Domains Detection Through Discretization

    LING, Z., ZHANG, Y. W. & LI, S. C., Sept 2024, In: Journal of Computational Biology. 31, 9, p. 784-796

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  9. Published

    Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome

    Wang, S., Jiang, Y., Che, L., Wang, R. H. & Li, S. C., 12 Aug 2024, In: Nucleic acids research. 52, 14, 22 p., e61.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  10. Published

    Multi-regional sequencing reveals the genetic and immune heterogeneity of non-cancerous tissues in gastric cancer

    Zhou, Y., Li, S., Hu, Y., Xu, X., Cui, J., Li, S. & Li, Z. & 2 others, Ji, J. & Xing, R., Aug 2024, In: Journal of Pathology. 263, 4-5, p. 454-465

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  11. Accepted/In press/Filed

    Machine Learning With Neural Networks For Reducing Bacterial Sequencecontamination In Phage Genome Constructions

    LI, S. (Inventor), WANG, R. (Inventor) & PAN, G. (Inventor), 3 Jul 2024, (Accepted/In press/Filed) Priority No. 18/762,693

    Research output: Patents, Agreements and Assignments › RGC 51 - Patents (CityU)

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  12. Published

    Unlocking T-cell receptor–epitope insights with structural analysis

    Huo, M., Jiang, Y. & Li, S. C., Jul 2024, In: Nature Computational Science. 4, 7, p. 475-476

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  13. Published

    Immune-tumor interaction dictates spatially directed evolution of esophageal squamous cell carcinoma

    Zhou, Y., Mo, S., Cui, H., Sun, R., Zhang, W., Zhuang, X. & Xu, E. & 16 others, Li, H., Cheng, Y., Meng, Y., Liu, M., Yan, T., Liu, H., Zhang, L., Yang, B., Xi, Y., Wang, S., Cheng, X., Li, S., Liu, Z., Zhan, Q., Hu, Z. & Cui, Y., May 2024, In: National Science Review. 11, 5, nwae150.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  14. Published

    A novel deep generative model for mRNA vaccine development: Designing 5′ UTRs with N1-methyl-pseudouridine modification

    Tang, X., Huo, M., Chen, Y., Huang, H., Qin, S., Luo, J. & Qin, Z. & 12 others, Jiang, X., Liu, Y., Duan, X., Wang, R., Chen, L., Li, H., Fan, N., He, Z., He, X., Shen, B., Li, S. C. & Song, X., Apr 2024, In: Acta Pharmaceutica Sinica B. 14, 4, p. 1814-1826 13 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  15. Published

    Coding genomes with gapped pattern graph convolutional network

    Wang, R. H., Ng, Y. K., Zhang, X., Wang, J. & Li, S. C., Apr 2024, In: Bioinformatics. 40, 4, btae188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  16. Published

    Elevated incidence of somatic mutations at prevalent genetic sites

    Wang, M., Li, S. C. & Shen, B., Mar 2024, In: Briefings in Bioinformatics. 25, 2, bbae065.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  17. Published

    TADClam: overlapped and hierarchical topologically associating domains detection with community affiliation model

    Ling, Z., Li, S. Y., Liang, Q. S. & Li, S. C., 10 Jan 2024, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE Xplore, p. 54-61 8 p. (IEEE International Conference on Bioinformatics and Biomedicine (BIBM)).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Check@CityULib
  18. Published

    PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations

    Wang, R. H., Yang, S., Liu, Z., Zhang, Y., Wang, X., Xu, Z. & Wang, J. & 1 others, Li, S. C., 5 Jan 2024, In: Nucleic acids research. 52, D1, p. D756–D761

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 26
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  19. Published

    Biomarkers and computational models for predicting efficacy to tumor ICI immunotherapy

    Qin, Y., Huo, M., Liu, X. & Li, S. C., 2024, In: Frontiers in Immunology. 15, 1368749.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  20. Published

    Corrigendum: Biomarkers and computational models for predicting efficacy to tumor ICI immunotherapy

    Qin, Y., Huo, M., Liu, X. & Li, S. C., 2024, In: Frontiers in Immunology. 15, 1438587.

    Research output: Journal Publications and Reviews › Erratum

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  21. Published

    F2Key: Dynamically Converting Your Face into a Private Key Based on COTS Headphones for Reliable Voice Interaction

    Duan, D., Sun, Z., Ni, T., Li, S., Jia, X., Xu, W. & Li, T., 2024, MOBISYS ’24 - Proceedings of the 2024 The 22nd Annual International Conference on Mobile Systems, Applications and Services. New York, NY: Association for Computing Machinery, p. 127-140 14 p.

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Scopus citations: 5
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  22. Published

    Metabolic profiles outperform the microbiota in assessing the response of vaginal microenvironments to the changed state of HPV infection

    Dai, W., Du, H., Zhou, Q., Li, S., Wang, Y., Hou, J. & Guo, C. & 5 others, Yang, Q., Li, C., Xie, S., Li, S. C. & Wu, R., 2024, In: npj Biofilms and Microbiomes. 10, 26.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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