Prof. LI Shuaicheng (李帥成)

Research Output

  1. 2019
  2. Published

    DeepMF: deciphering the latent patterns in omics profiles with a deep learning method

    Chen, L., Xu, J. & Li, S. C., 2019, In: BMC Bioinformatics. 20, Suppl 23, 648.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 16
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  3. Published

    Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities

    Zeng, Q., Li, D., He, Y., Li, Y., Yang, Z., Zhao, X. & Liu, Y. & 17 others, Wang, Y., Sun, J., Feng, X., Wang, F., Chen, J., Zheng, Y., Yang, Y., Sun, X., Xu, X., Wang, D., Kenney, T., Jiang, Y., Gu, H., Li, Y., Zhou, K., Li, S. & Dai, W., 2019, In: Scientific Reports. 9, 13424.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 273
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  4. Published

    Large-scale 3D chromatin reconstruction from chromosomal contacts

    Zhang, Y., Liu, W., Lin, Y., Ng, Y. K. & Li, S., 2019, In: BMC Genomics. 20, Suppl. 2, 186.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 9
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  5. Published

    LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics

    Li, C., Jiang, Y. & Li, S., 2019, In: BMC Bioinformatics. 20, Suppl 23, 12 p., 702.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 10
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  6. Published

    MIRIA: a webserver for statistical, visual and meta-analysis of RNA editing data in mammals

    Feng, X., Wang, Z., Li, H. & Li, S. C., 2019, In: BMC Bioinformatics. 20, Suppl 24, 596.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  7. Published

    SpliceFinder: ab initio prediction of splice sites using convolutional neural network

    Wang, R., Wang, Z., Wang, J. & Li, S., 2019, In: BMC Bioinformatics. 20, Supp. 23, 652.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 47
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  8. 2018
  9. Online published

    Origin and evolution of qingke barley in Tibet

    Zeng, X., Guo, Y., Xu, Q., Mascher, M., Guo, G., Li, S. & Mao, L. & 24 others, Liu, Q., Xia, Z., Zhou, J., Yuan, H., Tai, S., Wang, Y., Wei, Z., Song, L., Zha, S., Li, S., Tang, Y., Bai, L., Zhuang, Z., He, W., Zhao, S., Fang, X., Gao, Q., Yin, Y., Wang, J., Yang, H., Zhang, J., Henry, R. J., Stein, N. & Tashi, N., 21 Dec 2018, (Online published) In: Nature Communications. 9, 5433.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 149
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  10. Published

    Coding mutations in NUS1 contribute to Parkinson's disease

    Guo, J.-F., Zhang, L., Li, K., Mei, J.-P., Xue, J., Chen, J. & Tang, X. & 33 others, Shen, L., Jiang, H., Chen, C., Guo, H., Wu, X.-L., Sun, S.-L., Xu, Q., Sun, Q.-Y., Chan, P., Shang, H.-F., Wang, T., Zhao, G.-H., Liu, J.-Y., Xie, X.-F., Jiang, Y.-Q., Liu, Z.-H., Zhao, Y.-W., Zhu, Z.-B., Li, J.-D., Hu, Z.-M., Yan, X.-X., Fang, X.-D., Wang, G.-H., Zhang, F.-Y., Xia, K., Liu, C.-Y., Zhu, X.-W., Yue, Z.-Y., Li, S. C., Cai, H.-B., Zhang, Z.-H., Duan, R.-H. & Tang, B.-S., 6 Nov 2018, In: PNAS: Proceedings of the National Academy of Sciences of the United States of America. 115, 45, p. 11567-11572

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 73
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  11. Published

    Alterations of Gut Microbiota in Cholestatic Infants and Their Correlation With Hepatic Function

    Guo, C., Li, Y., Wang, P., Li, Y., Qiu, C., Li, M. & Wang, D. & 6 others, Zhao, R., Li, D., Wang, Y., Li, S., Dai, W. & Zhang, L., Nov 2018, In: Frontiers in Microbiology. 9, 2682.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 32
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  12. Published

    Guest Editorial for the 15th Asia Pacific Bioinformatics Conference

    Wang, L., Li, S. C. & Chen, Y.-P. P., Sept 2018, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 15, 5, p. 1513-1514

    Research output: Journal Publications and ReviewsEditorial Preface

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  13. Published

    NGS-based likelihood ratio for identifying contributors in two- and three-person DNA mixtures

    Chan Mun Wei, J., Zhao, Z., Li, S. C. & Ng, Y. K., Jun 2018, In: Computational Biology and Chemistry. 74, p. 428-433

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  14. Published

    IsoRef improves the reference-based transcriptome assembly accuracy for RNA-seq data

    Ao, X., Zhao, Z. & Li, S., Mar 2018, Proceedings - 10th International Conference on Bioinformatics and Computational Biology (BICOB 2018). Al-Mubaid, H., Ding, Q. & Eulenstein, O. (eds.). The International Society for Computers and Their Applications (ISCA), p. 148-153

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

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  15. Published

    In silico design of MHC class I high binding affinity peptides through motifs activation map

    Xiao, Z., Zhang, Y., Yu, R., Chen, Y., Jiang, X., Wang, Z. & Li, S., 2018, In: BMC Bioinformatics. 19, Suppl 19, 516.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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  16. Published

    KDiamend: a package for detecting key drivers in a molecular ecological network of disease

    Lyu, M., Chen, J., Jiang, Y., Dong, W., Fang, Z. & Li, S., 2018, In: BMC Systems Biology. 12, Suppl 1, 5.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 4
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  17. Published

    Microbiota Composition in Upper Respiratory Tracts of Healthy Children in Shenzhen, China, Differed with Respiratory Sites and Ages

    Wang, H., Dai, W., Feng, X., Zhou, Q., Wang, H., Yang, Y. & Li, S. & 1 others, Zheng, Y., 2018, In: BioMed Research International. 2018, 6515670.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 34
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  18. Published

    Placing segments on parallel arcs

    Ng, Y. K., Jia, W. & Li, S. C., 2018, Combinatorial Algorithms: 29th International Workshop, IWOCA 2018, Proceedings. Iliopoulos, C., Leong, H. W. & Sung, W.-K. (eds.). Springer International Publishing AG, p. 298-310 (Lecture Notes in Computer Science; vol. 10979).

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

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  19. Published

    Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater

    Zhou, X., Guang, X., Sun, D., Xu, S., Li, M., Seim, I. & Jie, W. & 14 others, Yang, L., Zhu, Q., Xu, J., Gao, Q., Kaya, A., Dou, Q., Chen, B., Ren, W., Li, S., Zhou, K., Gladyshev, V. N., Nielsen, R., Fang, X. & Yang, G., 2018, In: Nature Communications. 9, 1276.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 114
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  20. Published

    The concordance between upper and lower respiratory microbiota in children with Mycoplasma pneumoniae pneumonia

    Dai, W., Wang, H., Zhou, Q., Feng, X., Lu, Z., Li, D. & Yang, Z. & 7 others, Liu, Y., Li, Y., Xie, G., Shen, K., Yang, Y., Zheng, Y. & Li, S., 2018, In: Emerging Microbes and Infections. 7, 92.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 39
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  21. 2017
  22. Published

    Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts

    Zhu, J., Zhang, H., Li, S. C., Wang, C., Kong, L., Sun, S. & Zheng, W.-M. & 1 others, Bu, D., 1 Dec 2017, In: Bioinformatics. 33, 23, p. 3749-3757

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 38
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  23. Published

    The alteration of nasopharyngeal and oropharyngeal microbiota in children with MPP and Non-MPP

    Lu, Z., Dai, W., Liu, Y., Zhou, Q., Wang, H., Li, D. & Yang, Z. & 4 others, Li, Y., Xie, G., Li, S. & Zheng, Y., Dec 2017, In: Genes. 8, 12, 380.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 12
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