Prof. LI Shuaicheng (李帥成)

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Research Output

  1. 2011

  2. On protein structure alignment under distance constraint

    Li, S. C. & Ng, Y. K., 22 Jul 2011, In: Theoretical Computer Science. 412, 32, p. 4187-4199

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 6
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  3. Finding nearly optimal GDT scores

    Li, S. C., Bu, D., Xu, J. & Li, M., 1 May 2011, In: Journal of Computational Biology. 18, 5, p. 693-704

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 8
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  4. Incorporating Ab Initio energy into threading approaches for protein structure prediction

    Shao, M., Wang, S., Wang, C., Yuan, X., Li, S. C., Zheng, W. & Bu, D., 15 Feb 2011, In: BMC Bioinformatics. 12, SUPPL. 1, S54.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
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  5. Error tolerant nmr backbone resonance assignment and automated structure generation

    Alipanahi, B., Gao, X., Karakoc, E., Li, S. C., Balbach, F., Feng, G. & Donaldson, L. & 1 others, Li, M., Feb 2011, In: Journal of Bioinformatics and Computational Biology. 9, 1, p. 15-41

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 22
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  6. Pedigree Reconstruction Using Identity by Descent

    Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 2011, Research in Computational Molecular Biology: 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 136-152 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. LNBI 6577).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Scopus citations: 8
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  7. 2010

  8. Protein secondary structure prediction using NMR chemical shift data

    Zhao, Y., Alipanahi, B., Li, S. C. & Li, M., Oct 2010, In: Journal of Bioinformatics and Computational Biology. 8, 5, p. 867-884

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 18
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  9. Calibur: A tool for clustering large numbers of protein decoys

    Li, S. C. & Ng, Y. K., 13 Jan 2010, In: BMC Bioinformatics. 11, 25.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 61
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  10. 2009

  11. On Protein Structure Alignment under Distance Constraint

    Li, S. C. & Ng, Y. K., Dec 2009, Algorithms and Computation: 20th International Symposium, ISAAC 2009, Proceedings. Dong, Y., Du, D.-Z. & Ibarra, O. (eds.). Springer Verlag, Vol. 5878 LNCS. p. 65-76 (Lecture Notes in Computer Science; vol. 5878).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Scopus citations: 10
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  12. Finding compact structural motifs

    Bu, D., Li, M., Li, S. C., Qian, J. & Xu, J., 20 Aug 2009, In: Theoretical Computer Science. 410, 30-32, p. 2834-2839

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  13. On two open problems of 2-interval patterns

    Li, S. C. & Li, M., 28 May 2009, In: Theoretical Computer Science. 410, 24-25, p. 2410-2423

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 6
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  14. Predicting local quality of a sequence-structure alignment

    Gao, X., Xu, J., Li, S. C. & Li, M., 2009, In: Journal of Bioinformatics and Computational Biology. 7, 5, p. 789-810

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  15. 2008

  16. A PTAS for the k-consensus structures problem under squared Euclidean distance

    Li, S. C., Ng, Y. K. & Zhang, L., Dec 2008, In: Algorithms. 1, 2, p. 43-51

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  17. Fragment-HMM: A new approach to protein structure prediction

    Shuai, C. L., Bu, D., Xu, J. & Li, M., Nov 2008, In: Protein Science. 17, 11, p. 1925-1934

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 51
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  18. Discriminative learning for protein conformation sampling

    Zhao, F., Li, S., Sterner, B. W. & Xu, J., Oct 2008, In: Proteins: Structure, Function and Genetics. 73, 1, p. 228-240

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 35
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  19. Designing succinct structural alphabets

    Li, S. C., Bu, D., Gao, X., Xu, J. & Li, M., Jul 2008, In: Bioinformatics. 24, 13

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 10
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  20. Consensus Approaches to Protein Structure Prediction

    Bu, D., Li, S., Gao, X., Yu, L., Xu, J. & Li, M., 21 Apr 2008, Machine Learning in Bioinformatics. John Wiley & Sons, Inc., p. 189-208

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 12 - Chapter in an edited book (Author) › peer-review

    Scopus citations: 1
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  21. A PTAS for the k-consensus structures problem under euclidean squared distance

    Li, S. C., Ng, Y. K. & Zhang, L., 2008, Frontiers in Algorithmics: Second International Workshop, FAW 2008, Proceedings. Springer Verlag, Vol. 5059 LNCS. p. 35-44 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5059 LNCS).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

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  22. Finding largest well-predicted subset of protein structure models

    Li, S. C., Bu, D., Xu, J. & Li, M., 2008, Combinatorial Pattern Matching: 19th Annual Symposium, CPM 2008, Proceedings. Springer Verlag, Vol. 5029 LNCS. p. 44-55 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5029 LNCS).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Scopus citations: 13
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  23. 2007

  24. Finding Compact Structural Motifs

    Qian, J., Li, S. C., Bu, D., Li, M. & Xu, J., Jul 2007, Combinatorial Pattern Matching: 18th Annual Symposium, CPM 2007, Proceedings. Ma, B. & Zhang, K. (eds.). Springer Verlag, p. 142-149 (Lecture Notes in Computer Science; vol. 4580).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Scopus citations: 7
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  25. Consensus contact prediction by linear programming.

    Gao, X., Bu, D., Li, S. C., Li, M. & Xu, J., 2007, In: Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6, p. 323-334

    Research output: Journal Publications and Reviews › RGC 22 - Publication in policy or professional journal

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