Prof. LI Shuaicheng (李帥成)
Research Output
- 2025
- Published
MEGA-GO: functions prediction of diverse protein sequence length using Multi-scalE Graph Adaptive neural network
Lee, Y., Gao, P., Xu, Y., Wang, Z., Li, S. & Chen, J., Feb 2025, In: Bioinformatics. 41, 2, btaf032.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
High cellular plasticity state of medulloblastoma local recurrence and distant dissemination
Liu, H., Zhang, J., Wang, Z., Wang, W., Han, D., Chen, X. & Su, Y. & 36 others, , 21 Jan 2025, In: Cell Reports Medicine. 6, 1, 101914.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Accepted/In press/Filed
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M. & LI, S., 21 Jan 2025, (Accepted/In press/Filed) In: GigaScience.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
DeepTAPE: Enhancing Systemic Lupus Erythematosus Diagnosis with Deep Learning Based on TCRβ CDR3 Sequences
Shen, T., Huo, M., Nie, W., Li, K., Ma, Z., Feng, X. & Li, S. C., 10 Jan 2025, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Cannataro, M., Zheng, H., Gao, L., Cheng, J., de Miranda, J. L., Zumpano, E., Hu, X., Cho, Y.-R. & Park, T. (eds.). Institute of Electrical and Electronics Engineers, Inc., p. 1149-1154Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
- Published
GutMetaNet: An integrated database for exploring horizontal gene transfer and functional redundancy in the human gut microbiome
Jiang, Y., Wang, Y., Che, L., Yang, S., Zhang, X., Lin, Y. & Shi, Y. & 5 others, , 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D772-D782Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools
Li, Y., Feng, X., Chen, X., Yang, S., Zhao, Z., Chen, Y. & Li, S. C., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D179-D188Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 2 - Published
A comprehensive benchmarking for evaluating TCR embeddings in modeling TCR-epitope interactions
Feng, X., Huo, M., Li, H., Yang, Y., Jiang, Y., He, L. & Li, S. C., Jan 2025, In: Briefings in Bioinformatics. 26, 1, bbaf030.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome
Li, Y., Pan, G., Wang, S., Li, Z., Yang, R., Jiang, Y. & Chen, Y. & 2 others, , Jan 2025, In: Briefings in Bioinformatics. 26, 1, bbae620.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- 2024
- Published
Identifying T-cell clubs by embracing the local harmony between TCR and gene expressions
Zou, Y., Luo, J., Chen, L., Wang, X., Liu, W., Wang, R. H. & Li, S. C., Dec 2024, In: Molecular Systems Biology. 20, 12, p. 1329-1345Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Online published
Spatially Informed Graph Structure Learning Extracts Insights from Spatial Transcriptomics
Nie, W., Yu, Y., Wang, X., Wang, R. & Li, S. C., 9 Oct 2024, (Online published) In: Advanced Science. 2403572.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
SuperTAD-Fast: Accelerating Topologically Associating Domains Detection Through Discretization
LING, Z., ZHANG, Y. W. & LI, S. C., Sept 2024, In: Journal of Computational Biology. 31, 9, p. 784-796Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome
Wang, S., Jiang, Y., Che, L., Wang, R. H. & Li, S. C., 12 Aug 2024, In: Nucleic acids research. 52, 14, 22 p., e61.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Multi-regional sequencing reveals the genetic and immune heterogeneity of non-cancerous tissues in gastric cancer
Zhou, Y., Li, S., Hu, Y., Xu, X., Cui, J., Li, S. & Li, Z. & 2 others, , Aug 2024, In: Journal of Pathology. 263, 4-5, p. 454-465Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 3 - Accepted/In press/Filed
Machine Learning With Neural Networks For Reducing Bacterial Sequencecontamination In Phage Genome Constructions
LI, S. (Inventor), WANG, R. (Inventor) & PAN, G. (Inventor), 3 Jul 2024, (Accepted/In press/Filed) Priority No. 18/762,693Research output: Patents, Agreements and Assignments › RGC 51 - Patents (CityUHK)
- Published
Unlocking T-cell receptor–epitope insights with structural analysis
Huo, M., Jiang, Y. & Li, S. C., Jul 2024, In: Nature Computational Science. 4, 7, p. 475-476Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
Immune-tumor interaction dictates spatially directed evolution of esophageal squamous cell carcinoma
Zhou, Y., Mo, S., Cui, H., Sun, R., Zhang, W., Zhuang, X. & Xu, E. & 16 others, , May 2024, In: National Science Review. 11, 5, nwae150.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 5 - Published
A novel deep generative model for mRNA vaccine development: Designing 5′ UTRs with N1-methyl-pseudouridine modification
Tang, X., Huo, M., Chen, Y., Huang, H., Qin, S., Luo, J. & Qin, Z. & 12 others, , Apr 2024, In: Acta Pharmaceutica Sinica B. 14, 4, p. 1814-1826 13 p.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 4 - Published
Coding genomes with gapped pattern graph convolutional network
Wang, R. H., Ng, Y. K., Zhang, X., Wang, J. & Li, S. C., Apr 2024, In: Bioinformatics. 40, 4, btae188.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Elevated incidence of somatic mutations at prevalent genetic sites
Wang, M., Li, S. C. & Shen, B., Mar 2024, In: Briefings in Bioinformatics. 25, 2, bbae065.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
TADClam: overlapped and hierarchical topologically associating domains detection with community affiliation model
Ling, Z., Li, S. Y., Liang, Q. S. & Li, S. C., 10 Jan 2024, 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE Xplore, p. 54-61 8 p. (IEEE International Conference on Bioinformatics and Biomedicine (BIBM)).Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
