Dr. LI Shuaicheng (李帥成)

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Research Output

  1. 2023
  2. Published

    Protocol to analyze population structure and migration history based on human genome variation data

    Zhao, Z., Wang, Y., Zhang, Z. & Li, S. C., 17 Mar 2023, In: STAR Protocols. 4, 1, 101928.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  3. Published

    Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires

    Jiang, Y. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad038.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  4. Published

    IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data

    Zhang, W., Ju, J., Zhou, Y., Xiong, T., Wang, M., Li, C., Lu, S., & 4 othersLu, Z., Lin, L., Liu, X. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, 10 p., bbad080.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  5. Published

    Incorporating cell hierarchy to decipher the functional diversity of single cells

    Chen, L. & Li, S. C., 25 Jan 2023, In: Nucleic acids research. 51, 2, e9.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  6. Published

    TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

    Wang, X., Chen, L., Liu, W., Zhang, Y., Liu, D., Zhou, C., Shi, S., & 6 othersDong, J., Lai, Z., Zhao, B., Zhang, W., Cheng, H. & Li, S., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D1417–D1424

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  7. Published

    On triangle inequalities of correlation-based distances for gene expression profiles

    Chen, J., Ng, Y. K., Lin, L., Zhang, X. & Li, S., 2023, In: BMC Bioinformatics. 24, 40.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  8. 2022
  9. Accepted/In press/Filed

    AN OPTIMIZED COLORECTAL CANCER PREDICTION MODEL BASED ON HORIZONTAL GENE TRANSFER

    LI, S. & WANG, S., 26 Dec 2022, (Accepted/In press/Filed) Priority No. 63/477,199

    Research output: Patents, Agreements and Assignments (RGC: 51, 52, 53) › 51_Patents granted (CityU only, data source from KTO)

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  10. Published

    Manganese-coordinated mRNA vaccines with enhanced mRNA expression and immunogenicity induce robust immune responses against SARS-CoV-2 variants

    Fan, N., Chen, K., Zhu, R., Zhang, Z., Huang, H., Qin, S., Zheng, Q., & 11 othersHe, Z., He, X., Xiao, W., Zhang, Y., Gu, Y., Zhao, C., Liu, Y., Jiang, X., Li, S., Wei, Y. & Song, X., 21 Dec 2022, In: Science Advances. 8, 51

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  11. Published

    Spatial heterogeneity of infiltrating T cells in high-grade serous ovarian cancer revealed by multi-omics analysis

    Yang, B., Li, X., Zhang, W., Fan, J., Zhou, Y., Li, W., Yin, J., & 19 othersYang, X., Guo, E., Li, X., Fu, Y., Liu, S., Hu, D., Qin, X., Dou, Y., Xiao, R., Lu, F., Wang, Z., Qin, T., Wang, W., Zhang, Q., Li, S., Ma, D., Mills, G. B., Chen, G. & Sun, C., 20 Dec 2022, In: Cell Reports Medicine. 3, 12, 100856.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  12. Accepted/In press/Filed

    AN APPROACH TO CONGENITAL HEART DISEASE DIAGNOSIS

    LI, S., LI, M. & ZHANG, W., 15 Nov 2022, (Accepted/In press/Filed) Priority No. 63/425,667

    Research output: Patents, Agreements and Assignments (RGC: 51, 52, 53) › 51_Patents granted (CityU only, data source from KTO)

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  13. Published

    Nucleophilicity Prediction Using Graph Neural Networks

    Nie, W., Liu, D., Li, S., Yu, H. & Fu, Y., 26 Sep 2022, In: Journal of Chemical Information and Modeling. 62, 18, p. 4319-4328

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  14. Published

    System And Method for Enabling The Secure Storage, Transmission And Access of Genetic Data

    LI, S. & DONG, W., 20 Sep 2022, Patent No. US11,451,522, Priority No. 16/002,136

    Research output: Patents, Agreements and Assignments (RGC: 51, 52, 53) › 51_Patents granted (CityU only, data source from KTO)

    Check@CityULib
  15. Published

    Mining bacterial NGS data vastly expands the complete genomes of temperate phages

    Zhang, X., Wang, R., Xie, X., Hu, Y., Wang, J., Sun, Q., Feng, X., & 15 othersLin, W., Tong, S., Yan, W., Wen, H., Wang, M., Zhai, S., Sun, C., Wang, F., Niu, Q., Kropinski, A. M., Cui, Y., Jiang, X., Peng, S., Li, S. & Tong, Y., Sep 2022, In: NAR Genomics and Bioinformatics. 4, 3, lqac057.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 2
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  16. Published

    SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution

    Wang, J., Li, S., Chen, L. & Li, S. C., Sep 2022, In: NAR Genomics and Bioinformatics. 4, 3, lqac069.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  17. Published

    Profiling the peripheral blood T cell receptor repertoires of gastric cancer patients

    Wang, M., Gao, P., Ren, L., Duan, J., Yang, S., Wang, H., Wang, H., & 5 othersSun, J., Gao, X., Li, B., Li, S. & Su, W., 28 Jul 2022, In: Frontiers in Immunology. 13, 9 p., 848113.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  18. Published

    Resolving single-cell copy number profiling for large datasets

    Wang, R., Zhang, Y., Wang, M., Feng, X., Wang, J. & Li, S. C., Jul 2022, In: Briefings in Bioinformatics. 23, 4, bbac264.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  19. Online published

    Detecting TAD-like domains from RNA-associated interactions

    Zhang, Y. W., Chen, L. & Li, S. C., 25 May 2022, (Online published) In: Nucleic Acids Research.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  20. Published

    The Tibetan-Yi region is both a corridor and a barrier for human gene flow

    Zhang, Z., Zhang, Y., Wang, Y., Zhao, Z., Yang, M., Zhang, L., Zhou, B., & 9 othersXu, B., Zhang, H., Chen, T., Dai, W., Zhou, Y., Shi, S., Nielsen, R., Li, S. C. & Li, S., 26 Apr 2022, In: Cell Reports. 39, 4, 110720.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  21. Published

    Altered metabolome and microbiome features provide clues in understanding irritable bowel syndrome and depression comorbidity

    Han, L., Zhao, L., Zhou, Y., Yang, C., Xiong, T., Lu, L., Deng, Y., & 19 othersLuo, W., Chen, Y., Qiu, Q., Shang, X., Huang, L., Mo, Z., Huang, S., Huang, S., Liu, Z., Yang, W., Zhai, L., Ning, Z., Lin, C., Huang, T., Cheng, C., Zhong, L. L. D., Li, S., Bian, Z. & Fang, X., Apr 2022, In: ISME Journal. 16, 4, p. 983-996

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 13
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  22. Published

    Alteration of the respiratory microbiome in COVID-19 patients with different severities

    Li, Z., Li, Y., Li, L., Mo, X., Li, S., Xie, M., Zhan, Y., & 11 othersLin, Y., Li, Z., Xie, M., Chen, Z., Zhu, A., Ying, R., Yu, L., Zhao, J., Li, S. C., Cai, W. & Ye, F., Mar 2022, In: Journal of Genetics and Genomics. 49, 3, p. 258-261

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › Letter

    Scopus citations: 5
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