ZHANG Shixiong (張世雄)

Research Output

  1. 2024
  2. Published

    MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm

    Liu, Z., Wong, H., Chen, X., Lin, J., Zhang, S., Yan, S., Wang, F., & 2 othersLi, X. & Wong, K., Jan 2024, In: Computers in Biology and Medicine. 168, 107753.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  3. 2023
  4. Published

    Review of single-cell RNA-seq data clustering for cell-type identification and characterization

    ZHANG, S., LI, X., LIN, J., LIN, Q. & WONG, K., May 2023, In: RNA. 29, 5, p. 517-530

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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  5. Published

    Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA

    Yu, Z., Su, Y., Lu, Y., Yang, Y., Wang, F., Zhang, S., Chang, Y., & 2 othersWong, K. & Li, X., 2023, In: Nature Communications. 14, 400.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
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  6. 2022
  7. Published

    DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifs

    Lin, J., Huang, L., Chen, X., Zhang, S. & Wong, K., Jan 2022, In: Briefings in Bioinformatics. 23, 1, 9 p., bbab334.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  8. Published

    High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning

    Li, X., Li, S., Huang, L., Zhang, S. & Wong, K., Jan 2022, In: Briefings in Bioinformatics. 23, 1, bbab368.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 7
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  9. 2021
  10. Published

    Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data

    Li, X., Zhang, S. & Wong, K., Dec 2021, In: IEEE Transactions on Cybernetics. 51, 12, p. 5811-5824

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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  11. Published

    Evolving Transcriptomic Profiles from Single-Cell RNA-Seq Data Using Nature-Inspired Multiobjective Optimization

    Li, X., Zhang, S. & Wong, K., Nov 2021, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 18, 6, p. 2445-2458

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  12. Published

    Deep embedded clustering with multiple objectives on scRNA-seq data

    Li, X., Zhang, S. & Wong, K., Sept 2021, In: Briefings in Bioinformatics. 22, 5, bbab090.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 7
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  13. Published

    Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing

    Yu, Z., Bian, C., Liu, G., Zhang, S., Wong, K. & Li, X., Sept 2021, In: Briefings in Bioinformatics. 22, 5, bbab125.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  14. Published

    Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements

    Zhang, S., Li, X., Lin, Q. & Wong, K., Sept 2021, In: IEEE Transactions on Cybernetics. 51, 9, p. 4476-4487

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  15. Published

    Identification of pan-cancer Ras pathway activation with deep learning

    Li, X., Li, S., Wang, Y., Zhang, S. & Wong, K., Jul 2021, In: Briefings in Bioinformatics. 22, 4, bbaa258.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 7
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  16. Published

    Feature Selection and Feature Extraction: Highlights

    Wong, H., Chen, X., Tam, H., Lin, J., Zhang, S., Yan, S., Li, X., & 1 othersWong, K., 2021, ISMSI 2021: 2021 5th International Conference on Intelligent Systems, Metaheuristics and Swarm Intelligence. Association for Computing Machinery, p. 49-53 (ACM International Conference Proceeding Series).

    Research output: Chapters, Conference Papers, Creative and Literary WorksRGC 32 - Refereed conference paper (with host publication)peer-review

    Scopus citations: 4
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  17. 2020
  18. Published

    CRISPR‐Net: A Recurrent Convolutional Network Quantifies CRISPR Off‐Target Activities with Mismatches and Indels

    Lin, J., Zhang, Z., Zhang, S., Chen, J. & Wong, K., Jul 2020, In: Advanced Science. 7, 13, p. 1903562

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 33
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  19. Published

    Uncovering the key dimensions of high-throughput biomolecular data using deep learning

    Zhang, S., Li, X., Lin, Q., Lin, J. & Wong, K., 4 Jun 2020, In: Nucleic Acids Research. 48, 10, p. e56

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 10
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  20. Published

    Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies

    Li, X., Zhang, S. & Wong, K., Jan 2020, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 17, 1, p. 226-237

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 22
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  21. 2019
  22. Published

    Single-cell RNA-seq interpretations using evolutionary multiobjective ensemble pruning

    Li, X., Zhang, S. & Wong, K., 15 Aug 2019, In: Bioinformatics. 35, 16, p. 2809-2817 9 p.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 22
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  23. Published

    Early Cancer Detection from Multianalyte Blood Test Results

    Wong, K., Chen, J., Zhang, J., Lin, J., Yan, S., Zhang, S., Li, X., & 5 othersLiang, C., Peng, C., Lin, Q., Kwong, S. & Yu, J., 31 May 2019, In: iScience. 15, p. 332-341 9 p.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 20
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  24. Published

    Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications

    Zhang, S., Li, X., Lin, Q. & Wong, K., 1 Apr 2019, In: Bioinformatics. 35, 7, p. 1108-1115

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 24
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  25. 2018
  26. Published

    Two-factor high-order fuzzy-trend FTS model based on BSO-FCM and improved KA for TAIEX stock forecasting

    Zhang, W., Zhang, S. & Zhang, S., Oct 2018, In: Nonlinear Dynamics. 94, 2, p. 1429-1446

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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