Prof. LI Runsheng (李潤生)

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Research Output

  1. 2024
  2. Published

    Giraffe: A tool for comprehensive processing and visualization of multiple long-read sequencing data

    Liu, X., Shao, Y., Guo, Z., Ni, Y., Sun, X., Leung, A. Y. H. & Li, R., Dec 2024, In: Computational and Structural Biotechnology Journal. 23, p. 3241-3246

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  3. Published

    Nanopore strand-specific mismatch enables de novo detection of bacterial DNA modifications

    Liu, X., Ni, Y., Ye, L., Guo, Z., Tan, L., Li, J. & Yang, M. & 2 others, Chen, S. & Li, R., Nov 2024, In: Genome Research. 34, 11, p. 2025-2038

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  4. Published

    Synergies of co-infecting pathogens, sea lice (Lepeophetheirus salmonis) and Moritella viscosa, are impacted by exposure order, and host response to initial infection

    Cai, W., Zhong, L., Parrish, K., Kumar, S., Eslamloo, K., Fajei, E. & Whyte, S. K. & 8 others, Purcell, S. L., Jahangiri, L., LI, R., Caballero Solares, A., Taylor, R. G., Balder, R., Rise, M. L. & Fast, M. D., 15 Oct 2024, In: Aquaculture. 591, 741115.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  5. Published

    Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing

    Tan, L., Guo, Z., Shao, Y., Ye, L., Wang, M., Deng, X. & Chen, S. & 1 others, LI, R., 27 Aug 2024, In: Nucleic acids research. 52, 15, p. 8746-8762 17 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  6. Published

    A comparative analysis of alternative splicing patterns in Atlantic salmon (Salmo Salar) in response to Moritella viscosa and sea lice (Lepeophtheirus salmonis) infection

    Gao, S., Tan, S., Purcell, S. L., Whyte, S. K., Parrish, K., Zhong, L. & Zheng, S. & 6 others, Zhang, Y., Zhu, R., Jahangiri, L., Li, R., Fast, M. D. & Cai, W., Jun 2024, In: Fish and Shellfish Immunology. 149, 109606.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  7. Published

    Comprehensive genomic and plasmid characterization of multidrug-resistant bacterial strains by R10.4.1 nanopore sequencing

    Ye, L., Liu, X., Ni, Y., Xu, Y., Zheng, Z., Chen, K. & Hu, Q. & 6 others, Tan, L., Guo, Z., Wai, C. K., Chan, E. W. C., Li, R. & Chen, S., Jun 2024, In: Microbiological Research. 283, 127666.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
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  8. Published

    Nanopore Current Events Magnifier (nanoCEM): a novel tool for visualizing current events at modification sites of nanopore sequencing

    Guo, Z., Ni, Y., Tan, L., Shao, Y., Ye, L., Chen, S. & Li, R., Jun 2024, In: NAR Genomics and Bioinformatics. 6, 2, lqae052.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  9. Published

    Integrating metagenomic and isolation strategies revealed high contamination of pathogenies and resistome in market shrimps

    Ye, L., Zheng, Z., Wang, Y., Hu, Q., Zhong, L., Heng, H. & Guo, Z. & 3 others, Li, R., Chan, E. W. C. & Chen, S., 20 May 2024, In: Science of the Total Environment. 926, 171924.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  10. Published

    Chromosome level genome assembly and transcriptome analysis of E11 cells infected by tilapia lake virus

    Wang, X., Liu, X., Tan, L., Jahangiri, L., Cai, W., Kim, D. Y. & Li, R., May 2024, In: Fish and Shellfish Immunology. 148, 109505.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  11. Published

    Utilization of nanopore direct RNA sequencing to analyze viral RNA modifications

    Tan, L., Guo, Z., Wang, X., Kim, D. Y. & Li, R., Feb 2024, In: mSystems. 9, 2, e01163-23.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  12. 2023
  13. Published

    Nanopore sequencing identifies differentially methylated genes in the central nervous system in experimental autoimmune encephalomyelitis

    Si, W., Ni, Y., Jiang, Q., Tan, L., Sparagano, O., Li, R. & Yang, G., 15 Aug 2023, In: Journal of Neuroimmunology. 381, 578134.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  14. Published

    Transgenic IDH2R172K and IDH2R140Q zebrafish models recapitulated features of human acute myeloid leukemia

    Wang, D., Zheng, L., Cheng, B. Y. L., Sin, C.-F., Li, R., Tsui, S. P. & Yi, X. & 4 others, Ma, A. C. H., He, B. L., Leung, A. Y. H. & Sun, X., 13 Apr 2023, In: Oncogene. 42, 16, p. 1272–1281 10 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  15. Published

    Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping

    Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  16. Published

    Insect-Specific Chimeric Viruses Potentiated Antiviral Responses and Inhibited Pathogenic Alphavirus Growth in Mosquito Cells

    Tan, L., Zhang, Y., Kim, D. Y. & Li, R., Feb 2023, In: Microbiology Spectrum. 11, 1, e0361322.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  17. Published

    Benchmarking of Nanopore R10.4 and R9.4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing

    Ni, Y., Liu, X., Simeneh, Z. M., Yang, M. & Li, R., 2023, In: Computational and Structural Biotechnology Journal. 21, p. 2352-2364 13 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 61
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  18. Published

    Correction: Transgenic IDH2R172K and IDH2R140Q zebrafish models recapitulated features of human acute myeloid leukemia

    Wang, D., Zheng, L., Cheng, B. Y. L., Sin, C.-F., Li, R., Tsui, S. P. & Yi, X. & 4 others, Ma, A. C. H., He, B. L., Leung, A. Y. H. & Sun, X., 2023, In: Oncogene. 42, 1331.

    Research output: Journal Publications and Reviews › Erratum

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  19. Published

    Investigation of the First African Swine Fever Outbreak in a Domestic Pig Farm in Hong Kong

    Go, Y. Y., Ho, J. H. P., Tam, K. W. S., Kamali, M., Zhang, Y., Lau, C. C. Y. & Li, S. H. & 12 others, Wilson, M. T., Guo, Z., Li, R., Gu, G., Tse, M. P. Y., Hill, F. I., Batten, C., Corla, A., Flannery, J., Conan, A., Brackman, C. J. & Pfeiffer, D. U., 2023, In: Transboundary and Emerging Diseases. 2023, 1720474.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  20. Published

    Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow by Oxford Nanopore sequencing

    Liu, X., Ni, Y., Wang, D., Ye, S., Yang, M., Sun, X. & Leung, A. Y. H. & 1 others, Li, R., 2023, In: Scientific data. 10, p. 532

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  21. 2022
  22. Published

    Highly efficient transgenesis with miniMos in Caenorhabditis briggsae

    Ding, Q., Ren, X., Li, R., Chan, L., Ho, V. W. S., Bi, Y. & Xie, D. & 1 others, Zhao, Z., Dec 2022, In: G3: Genes, Genomes, Genetics. 12, 12, jkac254.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  23. Published

    Melatonin improves bisphenol A-induced cell apoptosis, oxidative stress and autophagy impairment via inhibition of the p38 MAPK signaling pathway in FLK-BLV cells

    Song, D., Liu, Y., Yao, Y., Liu, F., Tao, W., Zhou, X. & Li, R. & 2 others, Zhang, X. & Li, X., Jul 2022, In: Environmental Toxicology. 37, 7, p. 1551-1562

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 13
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