Dr. CHEN Lingxi (陳凌曦)

Research Output

  1. 2022
  2. Published

    PRCTC: a machine learning model for prediction of response to corticosteroid therapy in COVID-19 patients

    Gao, Y., Xiong, X., Jiao, X., Yu, Y., Chi, J., Zhang, W., Chen, L. & 2 others, Li, S. & Gao, Q., 15 Jan 2022, In: Aging. 14, 1, p. 54-72

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  3. Published

    Over-shedding of donor-derived cell-free DNA at immune-related regions into plasma of lung transplant recipient

    Luo, J., Liu, L., Chen, L., Xu, X., Wang, Y., Wei, B., Ju, C. & 16 others, Wang, X., Huang, L., Zeng, W., Miao, X., Sang, L., Huang, D., Pan, G., Peng, G., Chen, Z., Zhao, Z., Yang, C., Cui, W., Jiang, W., Xu, J., Li, S. C. & He, J., Jan 2022, In: Clinical and Translational Medicine. 12, 1, e622.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  4. Published

    Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics

    Chen, L., Qing, Y., Li, R., Li, C., Li, H., Feng, X. & Li, S. C., Jan 2022, In: Briefings in Bioinformatics. 23, 1, bbab452.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  5. Published

    SCSilicon: a tool for synthetic single-cell DNA sequencing data generation

    Feng, X. & Chen, L., 2022, In: BMC Genomics. 23, 359.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  6. 2021
  7. Published

    SpecHap: a diploid phasing algorithm based on spectral graph theory

    YU, Y., Chen, L., Miao, X. & Li, S. C., 8 Nov 2021, In: Nucleic Acids Research. 49, 19, e114.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  8. Published

    Prognostic implications of tumour-infiltrating lymphocytes for recurrence in epithelial ovarian cancer

    Wu, Y., Gao, Y., Chen, L., Jin, X., Chen, P. & Mo, Q., Oct 2021, In: Clinical and Experimental Immunology. 206, 1, p. 36-46

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  9. Published

    Development and validation of an online model to predict critical COVID-19 with immune-inflammatory parameters

    Gao, Y., Chen, L., Chi, J., Zeng, S., Feng, X., Li, H., Liu, D. & 10 others, Feng, X., Wang, S., Wang, Y., Yu, R., Yuan, Y., Xu, S., Li, C., Zhang, W., Li, S. & Gao, Q., 2021, In: Journal of Intensive Care. 9, 19.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 2
    Check@CityULib
  10. Published

    SCYN: single cell CNV profiling method using dynamic programming

    Feng, X., Chen, L., Qing, Y., Li, R., Li, C. & Li, S. C., 2021, In: BMC Genomics. 22, Supplement 5, 651.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  11. 2020
  12. Published

    CIRPMC: An online model with simplified inflammatory signature to predict the occurrence of critical illness in patients with COVID-19

    Gao, Y., Chen, L., Zeng, S., Feng, X., Chi, J., Wang, Y., Li, H. & 19 others, Jiang, T., Yu, Y., Jiao, X., Liu, D., Feng, X., Wang, S., Yu, R., Yuan, Y., Xu, S., Cai, G., Xiong, X., Chen, P., Mo, Q., Jin, X., Wu, Y., Ma, D., Li, C., Li, S. C. & Gao, Q., Oct 2020, In: Clinical and Translational Medicine. 10, 6, e210.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)Letterpeer-review

    Check@CityULib
  13. Published

    Corrigendum: Oviz-Bio: a web-based platform for interactive cancer genomics data visualization

    Jia, W., Li, H., Li, S., Chen, L. & Li, S. C., 20 Aug 2020, In: Nucleic Acids Research. 48, 14, p. 8203-8204

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)Erratum

    Scopus citations: 1
    Check@CityULib
  14. Published

    Oviz-Bio: a web-based platform for interactive cancer genomics data visualization

    Jia, W., Li, H., Li, S., Chen, L. & Li, S. C., 2 Jul 2020, In: Nucleic Acids Research. 48, W1, p. W415-W426

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 5
    Check@CityULib
  15. Published

    Heterogeneity of immune microenvironment in ovarian cancer and its clinical significance: a retrospective study

    Gao, Y., Chen, L., Cai, G., Xiong, X., Wu, Y., Ma, D., Li, S. C. & 1 others, Gao, Q., 2020, In: OncoImmunology. 9, 1, e1760067.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 15
    Check@CityULib
  16. Published

    I-Impute: a self-consistent method to impute single cell RNA sequencing data

    Feng, X., Chen, L., Wang, Z. & Li, S. C., 2020, In: BMC Genomics. 21, Suppl. 10, 618.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Check@CityULib
  17. Published

    Machine learning based early warning system enables accurate mortality risk prediction for COVID-19

    Gao, Y., Cai, G., Fang, W., Li, H., Wang, S., Chen, L., Yu, Y. & 25 others, Liu, D., Xu, S., Cui, P., Zeng, S., Feng, X., Yu, R., Wang, Y., Yuan, Y., Jiao, X., Chi, J., Liu, J., Li, R., Zheng, X., Song, C., Jin, N., Gong, W., Liu, X., Huang, L., Tian, X., Li, L., Xing, H., Ma, D., Li, C., Ye, F. & Gao, Q., 2020, In: Nature Communications. 11, 5033.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 74
    Check@CityULib
  18. 2019
  19. Published

    DeepMF: deciphering the latent patterns in omics profiles with a deep learning method

    Chen, L., Xu, J. & Li, S. C., 2019, In: BMC Bioinformatics. 20, Suppl 23, 648.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 8
    Check@CityULib