Dr. CHEN Lingxi (陳凌曦)

Research Output

  1. 2023
  2. Published

    Incorporating cell hierarchy to decipher the functional diversity of single cells

    Chen, L. & Li, S. C., 25 Jan 2023, In: Nucleic acids research. 51, 2, e9.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  3. Published

    TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

    Wang, X., Chen, L., Liu, W., Zhang, Y., Liu, D., Zhou, C., Shi, S., & 6 othersDong, J., Lai, Z., Zhao, B., Zhang, W., Cheng, H. & Li, S., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D1417–D1424

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  4. 2022
  5. Online published

    Novel Genetic Risk and Metabolic Signatures of Insulin Signaling and Androgenesis in the Anovulation of Polycystic Ovary Syndrome

    Wu, X., Wang, C. C., Cao, Y., Li, J., Li, Z., Ma, H., Gao, J., & 20 othersChang, H., Zhang, D., Cong, J., Wang, Y., Wu, Q., Han, X., Chung, P. W. J., Li, Y., Zheng, X., Chen, L., Zeng, L., Borchert, A., Kuhn, H., Chen, Z., Ng, E. H. Y., Stener-Victorin, E., Zhang, H., Legro, R. S., Mol, B. W. J. & Shi, Y., 14 Oct 2022, (Online published) In: Engineering. 9 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  6. Published

    A deep-learning-enabled diagnosis of ovarian cancer – Authors' reply

    Gao, Y., Li, H., Chen, L., Wu, Y., Ma, D. & Gao, Q., Sep 2022, In: The Lancet Digital Health. 4, 9, p. e631

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)Letter

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  7. Published

    SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution

    Wang, J., Li, S., Chen, L. & Li, S. C., Sep 2022, In: NAR Genomics and Bioinformatics. 4, 3, lqac069.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  8. Online published

    Detecting TAD-like domains from RNA-associated interactions

    Zhang, Y. W., Chen, L. & Li, S. C., 25 May 2022, (Online published) In: Nucleic Acids Research.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 1
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  9. Published

    Deep learning-enabled pelvic ultrasound images for accurate diagnosis of ovarian cancer in China: a retrospective, multicentre, diagnostic study

    88 authors, including, 8. A. I. & Chen, L., Mar 2022, In: The Lancet Digital Health. 4, 3, p. e179-e187

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 10
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  10. Published

    PRCTC: a machine learning model for prediction of response to corticosteroid therapy in COVID-19 patients

    Gao, Y., Xiong, X., Jiao, X., Yu, Y., Chi, J., Zhang, W., Chen, L., & 2 othersLi, S. & Gao, Q., 15 Jan 2022, In: Aging. 14, 1, p. 54-72

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  11. Published

    Over-shedding of donor-derived cell-free DNA at immune-related regions into plasma of lung transplant recipient

    Luo, J., Liu, L., Chen, L., Xu, X., Wang, Y., Wei, B., Ju, C., & 16 othersWang, X., Huang, L., Zeng, W., Miao, X., Sang, L., Huang, D., Pan, G., Peng, G., Chen, Z., Zhao, Z., Yang, C., Cui, W., Jiang, W., Xu, J., Li, S. C. & He, J., Jan 2022, In: Clinical and Translational Medicine. 12, 1, e622.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  12. Published

    Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics

    Chen, L., Qing, Y., Li, R., Li, C., Li, H., Feng, X. & Li, S. C., Jan 2022, In: Briefings in Bioinformatics. 23, 1, bbab452.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 3
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  13. Published

    eSMC: a statistical model to infer admixture events from individual genomics data

    Wang, Y., Zhao, Z., Miao, X., Wang, Y., Qian, X., Chen, L., Wang, C., & 1 othersLi, S., 2022, In: BMC Genomics. 23, Supplement 4, 827.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  14. Published

    SCSilicon: a tool for synthetic single-cell DNA sequencing data generation

    Feng, X. & Chen, L., 2022, In: BMC Genomics. 23, 359.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  15. 2021
  16. Published

    SpecHap: a diploid phasing algorithm based on spectral graph theory

    YU, Y., Chen, L., Miao, X. & Li, S. C., 8 Nov 2021, In: Nucleic Acids Research. 49, 19, e114.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 3
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  17. Published

    Prognostic implications of tumour-infiltrating lymphocytes for recurrence in epithelial ovarian cancer

    Wu, Y., Gao, Y., Chen, L., Jin, X., Chen, P. & Mo, Q., Oct 2021, In: Clinical and Experimental Immunology. 206, 1, p. 36-46

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 1
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  18. Published

    Development and validation of an online model to predict critical COVID-19 with immune-inflammatory parameters

    Gao, Y., Chen, L., Chi, J., Zeng, S., Feng, X., Li, H., Liu, D., & 10 othersFeng, X., Wang, S., Wang, Y., Yu, R., Yuan, Y., Xu, S., Li, C., Zhang, W., Li, S. & Gao, Q., 2021, In: Journal of Intensive Care. 9, 19.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 5
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  19. Published

    SCYN: single cell CNV profiling method using dynamic programming

    Feng, X., Chen, L., Qing, Y., Li, R., Li, C. & Li, S. C., 2021, In: BMC Genomics. 22, Supplement 5, 651.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 2
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  20. 2020
  21. Published

    CIRPMC: An online model with simplified inflammatory signature to predict the occurrence of critical illness in patients with COVID-19

    Gao, Y., Chen, L., Zeng, S., Feng, X., Chi, J., Wang, Y., Li, H., & 19 othersJiang, T., Yu, Y., Jiao, X., Liu, D., Feng, X., Wang, S., Yu, R., Yuan, Y., Xu, S., Cai, G., Xiong, X., Chen, P., Mo, Q., Jin, X., Wu, Y., Ma, D., Li, C., Li, S. C. & Gao, Q., Oct 2020, In: Clinical and Translational Medicine. 10, 6, e210.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)Letterpeer-review

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  22. Published

    Corrigendum: Oviz-Bio: a web-based platform for interactive cancer genomics data visualization

    Jia, W., Li, H., Li, S., Chen, L. & Li, S. C., 20 Aug 2020, In: Nucleic Acids Research. 48, 14, p. 8203-8204

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)Erratum

    Scopus citations: 3
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  23. Published

    Oviz-Bio: a web-based platform for interactive cancer genomics data visualization

    Jia, W., Li, H., Li, S., Chen, L. & Li, S. C., 2 Jul 2020, In: Nucleic Acids Research. 48, W1, p. W415-W426

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 6
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  24. Published

    Heterogeneity of immune microenvironment in ovarian cancer and its clinical significance: a retrospective study

    Gao, Y., Chen, L., Cai, G., Xiong, X., Wu, Y., Ma, D., Li, S. C., & 1 othersGao, Q., 2020, In: OncoImmunology. 9, 1, e1760067.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 24
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