Prof. Jilin ZHANG, 張繼林

Research output

Research output per year 2013 2014 2015 2017 2020 2021 2022 2024 2025

• 19 RGC 21 - Publication in refereed journal
• 2 Erratum
• 1 RGC 12 - Chapter in an edited book (Author)

Research output per year

Research output per year

Search results

• 2025

  Specificity landscapes of 40 R2R3-MYBs reveal how paralogs target different cis-elements by homodimeric binding

  Li, T. (Co-first Author), Chen, H. (Co-first Author), Ma, N. (Co-first Author), Jiang, D., Wu, J., Zhang, X., Li, H., Su, J., Chen, P., Liu, Q., Guan, Y., Zhu, X., Lin, J., Zhang, J., Wang, Q., Guo, H. & Zhu, F., Apr 2025, In: iMeta. 4, 2, e70009.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Transcription Factors 100%
  • Paralogy 100%
  • Homodimerization 75%
  • Transcription Initiation 25%
  • Transactivation 25%
  2 Downloads (CityUHK Scholars)
• 2024

  DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts

  Rimoldi, M., Wang, N., Zhang, J., Villar, D., Odom, D. T., Taipale, J., Flicek, P. & Roller, M., 6 Jun 2024, (Online published) In: Genome Biology. 25, 22 p., 146.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Transcription Factors 100%
  • DNA Methylation 100%
  • Methylation 50%
  • Binding Site 30%
  • FOXA1 20%
  4 Citations (Scopus)

  12 Downloads (CityUHK Scholars)

• On-chip droplet analysis and cell spheroid screening by capillary wrapping enabled shape-adaptive ferrofluid transporters

  Wang, X. (Co-first Author), Li, X. (Co-first Author), Pu, A., Shun, H. B., Chen, C., Ai, L., Tan, Z., Zhang, J., Liu, K., Gao, J., Ban, K. & Yao, X., 21 Mar 2024, In: Lab on a Chip. 24, 6, p. 1782-1793 12 p.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Tumor Spheroid 100%
  • Magnetic Field 50%
  • Drug Screening 50%
  • Cell Engineering 50%
  • Scale up 50%
  5 Citations (Scopus)

  37 Downloads (CityUHK Scholars)
• 2023

  Populational pan-ethnic screening panel enabled by deep whole genome sequencing

  Yang, L., Lin, Z., Gao, Y., Zhang, J., Peng, H., Li, Y., Che, J., Zhao, L. & Zhang, J., 2023, In: npj Genomic Medicine. 8, 38.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Whole Genome Sequencing 100%
  • Ethnic Group 100%
  • Autosomal Recessive Disorder 100%
  • Genomics 100%
  • Autosome 50%
  16 Downloads (CityUHK Scholars)
• 2022

  Phylogeny and sex chromosome evolution of Palaeognathae

  Wang, Z., Zhang, J., Xu, X., Witt, C., Deng, Y., Chen, G., Meng, G., Feng, S., Xu, L., Szekely, T., Zhang, G. & Zhou, Q., Feb 2022, In: Journal of Genetics and Genomics. 49, 2, p. 109-119

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  • Sex Chromosome 100%
  • Ratite 100%
  • Cladistics 100%
  • Homologous Recombination 12%
  • Gene Loss 12%
  16 Citations (Scopus)

• The highly conserved RNA-binding specificity of nucleocapsid protein facilitates the identification of drugs with broad anti-coronavirus activity

  Fan, S., Sun, W., Fan, L., Wu, N., Sun, W., Ma, H., Chen, S., Li, Z., Li, Y., Zhang, J. & Yan, J., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 5040-5044

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • RNA Binding 100%
  • Coronavirinae 100%
  • Virus Nucleocapsid 100%
  • G Protein 100%
  • Genome Packaging 66%
  3 Citations (Scopus)

  65 Downloads (CityUHK Scholars)
• 2021

  An atlas of the binding specificities of transcription factors in Pseudomonas aeruginosa directs prediction of novel regulators in virulence

  Wang, T., Sun, W., Fan, L., Hua, C., Wu, N., Fan, S., Zhang, J., Deng, X. & Yan, J., 2021, In: eLife. 10, e61885.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Transcription Factors 100%
  • Pseudomonas aeruginosa 100%
  • Infectious Agent 33%
  • Regulatory Network 33%
  • Sequence Motif 33%
  26 Citations (Scopus)

  98 Downloads (CityUHK Scholars)

• A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

  Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L., Dai, X., Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., Zhang, G. & Zhou, Q., Jan 2021, In: GigaScience. 10, 1, giaa142.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Duck 100%
  • Binding Site 14%
  • Homologous Recombination 14%
  • Transcription Factor CTCF 14%
  • Natural Selection 14%
  34 Citations (Scopus)

  34 Downloads (CityUHK Scholars)

• Author Correction: CRISPR-assisted detection of RNA–protein interactions in living cells

  Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W., Liao, L., Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Feb 2021, In: Nature Methods. 18, 2, p. 219

  Research output: Journal Publications and Reviews › Erratum

  Open Access

  • Clustered Regularly Interspaced Short Palindromic Repeat 100%
  1 Citation (Scopus)
• 2020

  Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

  Jolma, A., Zhang, J., Taipale, J., Morgunova, E., Kivioja, T., Laverty, K. U., Yin, Y., Zhu, F., Bourenkov, G., Morris, Q., Hughes, T. R., Maher, L. J. & Taipale, J., Jul 2020, In: Genome Research. 30, 7, p. 962-973

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • RNA-binding Protein 100%
  • RNA Sequence 100%
  • RNA 55%
  • RNA Recognition Motif 33%
  • Ribonuclease 11%
  60 Citations (Scopus)

  35 Downloads (CityUHK Scholars)

• CRISPR-assisted detection of RNA–protein interactions in living cells

  Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W., Liao, L., Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Jul 2020, In: Nature Methods. 17, 7, p. 685–688 4 p.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  • CRISPR 100%
  • Long Non-Coding RNA 75%
  • Binding Protein 50%
  • RNA 25%
  • RNA-binding Protein 25%
  88 Citations (Scopus)
• 2017

  CRISPR/Cas9 screening using unique molecular identifiers

  Schmierer, B., Botla, S. K., Zhang, J., Turunen, M., Kivioja, T. & Taipale, J., 1 Oct 2017, In: Molecular Systems Biology. 13, 10, 945.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • CRISPR/Cas9 100%
  • Gene Targeting 50%
  • Gene Knockout 50%
  44 Citations (Scopus)

  29 Downloads (CityUHK Scholars)

• Genomic and transcriptomic analyses of avian sex chromosomes and sex-linked genes

  Zhang, J., Li, J. & Zhou, Q., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1650. p. 69-85 (Methods in Molecular Biology; vol. 1650).

  Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 12 - Chapter in an edited book (Author) › peer-review

  • Gene Expression Profiling 100%
  • Gene Linkage 100%
  • Sex Chromosome 100%
  • Genomics 100%
  • Aves 100%

• Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth

  Dave, K., Sur, I., Yan, J., Zhang, J., Kaasinen, E., Zhong, F., Blaas, L., Li, X., Kharazi, S., Gustafsson, C., De Paepe, A., Månsson, R. & Taipale, J., 2017, In: eLife. 6, e23382.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Enhancer Region 100%
  • Myc 100%
  • Carcinogenesis 50%
  • Oncogene 25%
  51 Citations (Scopus)

  44 Downloads (CityUHK Scholars)

• The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

  Shao, C., Bao, B., Xie, Z., Chen, X., Li, B., Jia, X., Yao, Q., Ortí, G., Li, W., Li, X., Hamre, K., Xu, J., Wang, L., Chen, F., Tian, Y., Schreiber, A. M., Wang, N., Wei, F., Zhang, J. & Dong, Z. & 16 others, Gao, L., Gai, J., Sakamoto, T., Mo, S., Chen, W., Shi, Q., Li, H., Xiu, Y., Li, Y., Xu, W., Shi, Z., Zhang, G., Power, D. M., Wang, Q., Schartl, M. & Chen, S., 1 Jan 2017, In: Nature Genetics. 49, 1, p. 119-124

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Tretinoin 100%
  • Retinoic Acid 100%
  • Paralichthys olivaceus 100%
  • Transcriptome 100%
  • Phototransduction 66%
  195 Citations (Scopus)

  46 Downloads (CityUHK Scholars)
• 2015

  Erratum: Camelid genomes reveal evolution and adaptation to desert environments

  Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H., Zhang, L., Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L. & Liu, Y. & 21 others, Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 28 Jan 2015, In: Nature Communications. 6, 6107.

  Research output: Journal Publications and Reviews › Erratum

  Open Access
  9 Citations (Scopus)

• Improving the ostrich genome assembly using optical mapping data

  Zhang, J., Li, C., Zhou, Q. & Zhang, G., 2015, In: GigaScience. 4, 1, 24.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Ostrich 100%
  • Genome Sequencing 14%
  • Comparative Genomics 14%
  • Fluorescence in Situ Hybridization 14%
  • Phylogenomics 14%
  27 Citations (Scopus)

  22 Downloads (CityUHK Scholars)
• 2014

  Camelid genomes reveal evolution and adaptation to desert environments

  Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H., Zhang, L., Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L. & Liu, Y. & 21 others, Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 21 Oct 2014, In: Nature Communications. 5, 5188.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  • Dromedary 100%
  • Bactrian Camel 100%
  • Alpaca 100%
  • Camelid 100%
  • Glucose Blood Level 33%
  247 Citations (Scopus)

• Complex evolutionary trajectories of sex chromosomes across bird taxa

  Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M. T. P. & Zhang, G., 12 Dec 2014, In: Science. 346, 6215, 1246338.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  • Taxon 100%
  • Sex Chromosome 100%
  • Aves 100%
  • Pseudoautosomal Region 50%
  • Hen 25%
  228 Citations (Scopus)

• Temporal genomic evolution of bird sex chromosomes

  Wang, Z., Zhang, J., Yang, W., An, N., Zhang, P., Zhang, G. & Zhou, Q., 2014, In: BMC Evolutionary Biology. 14, 1, 250.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Autosome 100%
  • Sex Chromosome 100%
  • Genomics 100%
  • Intron 50%
  • Gene Expression 50%
  45 Citations (Scopus)

  27 Downloads (CityUHK Scholars)

• Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

  Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P., Song, W., An, N., Chalopin, D., Volff, J.-N., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N. & Wu, K. & 25 others, Yang, C., Zhou, Q., Liao, X., Yang, L., Hu, Q., Zhang, J., Meng, L., Jin, L., Tian, Y., Lian, J., Yang, J., Miao, G., Liu, S., Liang, Z., Yan, F., Li, Y., Sun, B., Zhang, H., Zhang, J., Zhu, Y., Du, M., Zhao, Y., Schartl, M., Tang, Q. & Wang, J., Mar 2014, In: Nature Genetics. 46, 3, p. 253-260

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Sex Chromosome 100%
  • Gene Loss 14%
  • Convergent Evolution 14%
  • Heterogametic Sex 14%
  • Cynoglossus semilaevis 14%
  690 Citations (Scopus)

  20 Downloads (CityUHK Scholars)
• 2013

  The tiger genome and comparative analysis with lion and snow leopard genomes

  Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., Oh, S., Kim, H.-M., Jho, S., Kim, S., Shin, Y.-A., Kim, B. C., Kim, H., Kim, C.-U., Luo, S.-J., Johnson, W. E., Koepfli, K.-P., Schmidt-Küntzel, A., Turner, J. A. & Marker, L. & 38 others, Harper, C., Miller, S. M., Jacobs, W., Bertola, L. D., Kim, T. H., Lee, S., Zhou, Q., Jung, H.-J., Xu, X., Gadhvi, P., Xu, P., Xiong, Y., Luo, Y., Pan, S., Gou, C., Chu, X., Zhang, J., Liu, S., He, J., Chen, Y., Yang, L., Yang, Y., He, J., Liu, S., Wang, J., Kim, C. H., Kwak, H., Kim, J.-S., Hwang, S., Ko, J., Kim, C.-B., Kim, S., Bayarlkhagva, D., Paek, W. K., Kim, S.-J., O'Brien, S. J., Wang, J. & Bhak, J., 2013, In: Nature Communications. 4, 2433.

  Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

  Open Access

  File

  • Panthera Tigris 100%
  • Panthera Leo 100%
  • Snow Leopard 100%
  • Tiger 100%
  • Lion 100%
  205 Citations (Scopus)

  25 Downloads (CityUHK Scholars)