Jilin ZHANG

2025

Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer

Sur, I., Zhao, W., Zhang, J., Pilström, M. K., Webb, A. T., Cheng, H., Ristimäki, A., Katajisto, P., Enge, M., Rannikmae, H., de la Roche, M. & Taipale, J., Jun 2025, In: Life Science Alliance. 8, 6, e20243090.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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Specificity landscapes of 40 R2R3-MYBs reveal how paralogs target different cis-elements by homodimeric binding

Li, T. (Co-first Author), Chen, H. (Co-first Author), Ma, N. (Co-first Author), Jiang, D., Wu, J., Zhang, X., Li, H., Su, J., Chen, P., Liu, Q., Guan, Y., Zhu, X., Lin, J., Zhang, J., Wang, Q., Guo, H. & Zhu, F., Apr 2025, In: iMeta. 4, 2, e70009.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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2 Citations (Scopus)

10 Downloads (CityUHK Scholars)

2024

DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts

Rimoldi, M., Wang, N., Zhang, J., Villar, D., Odom, D. T., Taipale, J., Flicek, P. & Roller, M., 6 Jun 2024, (Online published) In: Genome Biology. 25, 22 p., 146.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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5 Citations (Scopus)

14 Downloads (CityUHK Scholars)

On-chip droplet analysis and cell spheroid screening by capillary wrapping enabled shape-adaptive ferrofluid transporters

Wang, X. (Co-first Author), Li, X. (Co-first Author), Pu, A., Shun, H. B., Chen, C., Ai, L., Tan, Z., Zhang, J., Liu, K., Gao, J., Ban, K. & Yao, X., 21 Mar 2024, In: Lab on a Chip. 24, 6, p. 1782-1793 12 p.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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6 Citations (Scopus)

44 Downloads (CityUHK Scholars)

2023

Populational pan-ethnic screening panel enabled by deep whole genome sequencing

Yang, L., Lin, Z., Gao, Y., Zhang, J., Peng, H., Li, Y., Che, J., Zhao, L. & Zhang, J., 2023, In: npj Genomic Medicine. 8, 38.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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25 Downloads (CityUHK Scholars)

2022

Phylogeny and sex chromosome evolution of Palaeognathae

Wang, Z., Zhang, J., Xu, X., Witt, C., Deng, Y., Chen, G., Meng, G., Feng, S., Xu, L., Szekely, T., Zhang, G. & Zhou, Q., Feb 2022, In: Journal of Genetics and Genomics. 49, 2, p. 109-119

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

16 Citations (Scopus)

The highly conserved RNA-binding specificity of nucleocapsid protein facilitates the identification of drugs with broad anti-coronavirus activity

Fan, S., Sun, W., Fan, L., Wu, N., Sun, W., Ma, H., Chen, S., Li, Z., Li, Y., Zhang, J. & Yan, J., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 5040-5044

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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4 Citations (Scopus)

67 Downloads (CityUHK Scholars)

2021

An atlas of the binding specificities of transcription factors in Pseudomonas aeruginosa directs prediction of novel regulators in virulence

Wang, T., Sun, W., Fan, L., Hua, C., Wu, N., Fan, S., Zhang, J., Deng, X. & Yan, J., 2021, In: eLife. 10, e61885.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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27 Citations (Scopus)

100 Downloads (CityUHK Scholars)

A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L., Dai, X., Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., Zhang, G. & Zhou, Q., Jan 2021, In: GigaScience. 10, 1, giaa142.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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34 Citations (Scopus)

35 Downloads (CityUHK Scholars)

Author Correction: CRISPR-assisted detection of RNA–protein interactions in living cells

Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W., Liao, L., Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Feb 2021, In: Nature Methods. 18, 2, p. 219

Research output: Journal Publications and Reviews › Erratum

Open Access

1 Citation (Scopus)

2020

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

Jolma, A., Zhang, J., Taipale, J., Morgunova, E., Kivioja, T., Laverty, K. U., Yin, Y., Zhu, F., Bourenkov, G., Morris, Q., Hughes, T. R., Maher, L. J. & Taipale, J., Jul 2020, In: Genome Research. 30, 7, p. 962-973

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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60 Citations (Scopus)

35 Downloads (CityUHK Scholars)

CRISPR-assisted detection of RNA–protein interactions in living cells

Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W., Liao, L., Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Jul 2020, In: Nature Methods. 17, 7, p. 685–688 4 p.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

90 Citations (Scopus)

2017

CRISPR/Cas9 screening using unique molecular identifiers

Schmierer, B., Botla, S. K., Zhang, J., Turunen, M., Kivioja, T. & Taipale, J., 1 Oct 2017, In: Molecular Systems Biology. 13, 10, 945.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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44 Citations (Scopus)

35 Downloads (CityUHK Scholars)

Genomic and transcriptomic analyses of avian sex chromosomes and sex-linked genes

Zhang, J., Li, J. & Zhou, Q., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1650. p. 69-85 (Methods in Molecular Biology; vol. 1650).

Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 12 - Chapter in an edited book (Author) › peer-review

Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth

Dave, K., Sur, I., Yan, J., Zhang, J., Kaasinen, E., Zhong, F., Blaas, L., Li, X., Kharazi, S., Gustafsson, C., De Paepe, A., Månsson, R. & Taipale, J., 2017, In: eLife. 6, e23382.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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51 Citations (Scopus)

45 Downloads (CityUHK Scholars)

The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

Shao, C., Bao, B., Xie, Z., Chen, X., Li, B., Jia, X., Yao, Q., Ortí, G., Li, W., Li, X., Hamre, K., Xu, J., Wang, L., Chen, F., Tian, Y., Schreiber, A. M., Wang, N., Wei, F., Zhang, J. & Dong, Z. & 16 others, Gao, L., Gai, J., Sakamoto, T., Mo, S., Chen, W., Shi, Q., Li, H., Xiu, Y., Li, Y., Xu, W., Shi, Z., Zhang, G., Power, D. M., Wang, Q., Schartl, M. & Chen, S., 1 Jan 2017, In: Nature Genetics. 49, 1, p. 119-124

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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195 Citations (Scopus)

46 Downloads (CityUHK Scholars)

2015

Erratum: Camelid genomes reveal evolution and adaptation to desert environments

Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H., Zhang, L., Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L. & Liu, Y. & 21 others, Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 28 Jan 2015, In: Nature Communications. 6, 6107.

Research output: Journal Publications and Reviews › Erratum

Open Access

9 Citations (Scopus)

Improving the ostrich genome assembly using optical mapping data

Zhang, J., Li, C., Zhou, Q. & Zhang, G., 2015, In: GigaScience. 4, 1, 24.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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27 Citations (Scopus)

28 Downloads (CityUHK Scholars)

2014

Camelid genomes reveal evolution and adaptation to desert environments

Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H., Zhang, L., Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L. & Liu, Y. & 21 others, Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 21 Oct 2014, In: Nature Communications. 5, 5188.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

247 Citations (Scopus)

Complex evolutionary trajectories of sex chromosomes across bird taxa

Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D., Gilbert, M. T. P. & Zhang, G., 12 Dec 2014, In: Science. 346, 6215, 1246338.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

230 Citations (Scopus)

Temporal genomic evolution of bird sex chromosomes

Wang, Z., Zhang, J., Yang, W., An, N., Zhang, P., Zhang, G. & Zhou, Q., 2014, In: BMC Evolutionary Biology. 14, 1, 250.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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45 Citations (Scopus)

27 Downloads (CityUHK Scholars)

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P., Song, W., An, N., Chalopin, D., Volff, J.-N., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N. & Wu, K. & 25 others, Yang, C., Zhou, Q., Liao, X., Yang, L., Hu, Q., Zhang, J., Meng, L., Jin, L., Tian, Y., Lian, J., Yang, J., Miao, G., Liu, S., Liang, Z., Yan, F., Li, Y., Sun, B., Zhang, H., Zhang, J., Zhu, Y., Du, M., Zhao, Y., Schartl, M., Tang, Q. & Wang, J., Mar 2014, In: Nature Genetics. 46, 3, p. 253-260

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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693 Citations (Scopus)

20 Downloads (CityUHK Scholars)

2013

The tiger genome and comparative analysis with lion and snow leopard genomes

Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., Oh, S., Kim, H.-M., Jho, S., Kim, S., Shin, Y.-A., Kim, B. C., Kim, H., Kim, C.-U., Luo, S.-J., Johnson, W. E., Koepfli, K.-P., Schmidt-Küntzel, A., Turner, J. A. & Marker, L. & 38 others, Harper, C., Miller, S. M., Jacobs, W., Bertola, L. D., Kim, T. H., Lee, S., Zhou, Q., Jung, H.-J., Xu, X., Gadhvi, P., Xu, P., Xiong, Y., Luo, Y., Pan, S., Gou, C., Chu, X., Zhang, J., Liu, S., He, J., Chen, Y., Yang, L., Yang, Y., He, J., Liu, S., Wang, J., Kim, C. H., Kwak, H., Kim, J.-S., Hwang, S., Ko, J., Kim, C.-B., Kim, S., Bayarlkhagva, D., Paek, W. K., Kim, S.-J., O'Brien, S. J., Wang, J. & Bhak, J., 2013, In: Nature Communications. 4, 2433.

Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

Open Access

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205 Citations (Scopus)

32 Downloads (CityUHK Scholars)

Prof. Jilin ZHANG, 張繼林

Research output

Search results