Prof. ZHANG Jilin (張繼林)

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Research Output

  1. 2025
  2. Published

    Specificity landscapes of 40 R2R3-MYBs reveal how paralogs target different cis-elements by homodimeric binding

    Li, T. (Co-first Author), Chen, H. (Co-first Author), Ma, N. (Co-first Author), Jiang, D., Wu, J., Zhang, X. & Li, H. & 10 others, Su, J., Chen, P., Liu, Q., Guan, Y., Zhu, X., Lin, J., Zhang, J., Wang, Q., Guo, H. & Zhu, F., Apr 2025, In: iMeta. 4, 2, e70009.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  3. 2024

  4. DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts

    Rimoldi, M., Wang, N., Zhang, J., Villar, D., Odom, D. T., Taipale, J. & Flicek, P. & 1 others, Roller, M., 6 Jun 2024, (Online published) In: Genome Biology. 25, 22 p., 146.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  5. Published

    On-chip droplet analysis and cell spheroid screening by capillary wrapping enabled shape-adaptive ferrofluid transporters

    Wang, X., Li, X., Pu, A., Shun, H. B., Chen, C., Ai, L. & Tan, Z. & 5 others, Zhang, J., Liu, K., Gao, J., Ban, K. & Yao, X., 21 Mar 2024, In: Lab on a Chip. 24, 6, p. 1782-1793 12 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
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  6. 2023
  7. Published

    Populational pan-ethnic screening panel enabled by deep whole genome sequencing

    Yang, L., Lin, Z., Gao, Y., Zhang, J., Peng, H., Li, Y. & Che, J. & 2 others, Zhao, L. & Zhang, J., 2023, In: npj Genomic Medicine. 8, 38.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  8. 2022

  9. Phylogeny and sex chromosome evolution of Palaeognathae

    Wang, Z., Zhang, J., Xu, X., Witt, C., Deng, Y., Chen, G. & Meng, G. & 5 others, Feng, S., Xu, L., Szekely, T., Zhang, G. & Zhou, Q., Feb 2022, In: Journal of Genetics and Genomics. 49, 2, p. 109-119

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 16
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  10. Published

    The highly conserved RNA-binding specificity of nucleocapsid protein facilitates the identification of drugs with broad anti-coronavirus activity

    Fan, S., Sun, W., Fan, L., Wu, N., Sun, W., Ma, H. & Chen, S. & 4 others, Li, Z., Li, Y., Zhang, J. & Yan, J., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 5040-5044

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  11. 2021
  12. Published

    Author Correction: CRISPR-assisted detection of RNA–protein interactions in living cells

    Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W. & Liao, L. & 8 others, Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Feb 2021, In: Nature Methods. 18, 2, p. 219

    Research output: Journal Publications and Reviews › Erratum

    Scopus citations: 1
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  13. A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

    Li, J., Zhang, J., Liu, J., Zhou, Y., Cai, C., Xu, L. & Dai, X. & 9 others, Feng, S., Guo, C., Rao, J., Wei, K., Jarvis, E. D., Jiang, Y., Zhou, Z., Zhang, G. & Zhou, Q., Jan 2021, In: GigaScience. 10, 1, giaa142.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 34
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  14. Published

    An atlas of the binding specificities of transcription factors in Pseudomonas aeruginosa directs prediction of novel regulators in virulence

    Wang, T., Sun, W., Fan, L., Hua, C., Wu, N., Fan, S. & Zhang, J. & 2 others, Deng, X. & Yan, J., 2021, In: eLife. 10, e61885.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 26
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  15. 2020

  16. Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

    Jolma, A., Zhang, J., Taipale, J., Morgunova, E., Kivioja, T., Laverty, K. U. & Yin, Y. & 6 others, Zhu, F., Bourenkov, G., Morris, Q., Hughes, T. R., Maher, L. J. & Taipale, J., Jul 2020, In: Genome Research. 30, 7, p. 962-973

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 57
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  17. Published

    CRISPR-assisted detection of RNA–protein interactions in living cells

    Yi, W., Li, J., Zhu, X., Wang, X., Fan, L., Sun, W. & Liao, L. & 8 others, Zhang, J., Li, X., Ye, J., Chen, F., Taipale, J., Chan, K. M., Zhang, L. & Yan, J., Jul 2020, In: Nature Methods. 17, 7, p. 685–688 4 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 87
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  18. 2017

  19. CRISPR/Cas9 screening using unique molecular identifiers

    Schmierer, B., Botla, S. K., Zhang, J., Turunen, M., Kivioja, T. & Taipale, J., 1 Oct 2017, In: Molecular Systems Biology. 13, 10, 945.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 44
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  20. The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

    Shao, C., Bao, B., Xie, Z., Chen, X., Li, B., Jia, X. & Yao, Q. & 29 others, Ortí, G., Li, W., Li, X., Hamre, K., Xu, J., Wang, L., Chen, F., Tian, Y., Schreiber, A. M., Wang, N., Wei, F., Zhang, J., Dong, Z., Gao, L., Gai, J., Sakamoto, T., Mo, S., Chen, W., Shi, Q., Li, H., Xiu, Y., Li, Y., Xu, W., Shi, Z., Zhang, G., Power, D. M., Wang, Q., Schartl, M. & Chen, S., 1 Jan 2017, In: Nature Genetics. 49, 1, p. 119-124

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 193
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  21. Genomic and transcriptomic analyses of avian sex chromosomes and sex-linked genes

    Zhang, J., Li, J. & Zhou, Q., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1650. p. 69-85 (Methods in Molecular Biology; vol. 1650).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 12 - Chapter in an edited book (Author) › peer-review

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  22. Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth

    Dave, K., Sur, I., Yan, J., Zhang, J., Kaasinen, E., Zhong, F. & Blaas, L. & 6 others, Li, X., Kharazi, S., Gustafsson, C., De Paepe, A., Månsson, R. & Taipale, J., 2017, In: eLife. 6, e23382.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 51
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  23. 2015

  24. Erratum: Camelid genomes reveal evolution and adaptation to desert environments

    Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H. & Zhang, L. & 34 others, Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L., Liu, Y., Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 28 Jan 2015, In: Nature Communications. 6, 6107.

    Research output: Journal Publications and Reviews › Erratum

    Scopus citations: 9
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  25. Improving the ostrich genome assembly using optical mapping data

    Zhang, J., Li, C., Zhou, Q. & Zhang, G., 2015, In: GigaScience. 4, 1, 24.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 27
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  26. 2014

  27. Complex evolutionary trajectories of sex chromosomes across bird taxa

    Zhou, Q., Zhang, J., Bachtrog, D., An, N., Huang, Q., Jarvis, E. D. & Gilbert, M. T. P. & 1 others, Zhang, G., 12 Dec 2014, In: Science. 346, 6215, 1246338.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 226
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  28. Camelid genomes reveal evolution and adaptation to desert environments

    Wu, H., Guang, X., Al-Fageeh, M. B., Cao, J., Pan, S., Zhou, H. & Zhang, L. & 34 others, Abutarboush, M. H., Xing, Y., Xie, Z., Alshanqeeti, A. S., Zhang, Y., Yao, Q., Al-Shomrani, B. M., Zhang, D., Li, J., Manee, M. M., Yang, Z., Yang, L., Liu, Y., Zhang, J., Altammami, M. A., Wang, S., Yu, L., Zhang, W., Liu, S., Ba, L., Liu, C., Yang, X., Meng, F., Wang, S., Li, L., Li, E., Li, X., Wu, K., Zhang, S., Wang, J., Yin, Y., Yang, H., Al-Swailem, A. M. & Wang, J., 21 Oct 2014, In: Nature Communications. 5, 5188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 246
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  29. Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

    Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P. & Song, W. & 38 others, An, N., Chalopin, D., Volff, J.-N., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N., Wu, K., Yang, C., Zhou, Q., Liao, X., Yang, L., Hu, Q., Zhang, J., Meng, L., Jin, L., Tian, Y., Lian, J., Yang, J., Miao, G., Liu, S., Liang, Z., Yan, F., Li, Y., Sun, B., Zhang, H., Zhang, J., Zhu, Y., Du, M., Zhao, Y., Schartl, M., Tang, Q. & Wang, J., Mar 2014, In: Nature Genetics. 46, 3, p. 253-260

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 684
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