SHANG Jiayu (商家煜)

?
Filters
Filters

Reset

to
1 - 14 out of 14Page size: 20

Research Output

  1. 2023
  2. Accepted/In press/Filed

    PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer

    Shang, J., Peng, C., Tang, X. & Sun, Y., Jul 2023, (Accepted/In press/Filed) ISMB/ECCB 2023 Proceedings.

    Research output: Chapters, Conference Papers, Creative and Literary Works (RGC: 12, 32, 41, 45) › 32_Refereed conference paper (with ISBN/ISSN) › peer-review

    Check@CityULib
  3. Published

    HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer

    Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  4. Published

    PhaTYP: predicting the lifestyle for bacteriophages using BERT

    Shang, J., Tang, X. & Sun, Y., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac487.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 2
    Check@CityULib
  5. Published

    Virus classification for viral genomic fragments using PhaGCN2

    Jiang, J., Yuan, W., Shang, J., Shi, Y., Yang, L., Liu, M., Zhu, P., & 3 othersJin, T., Sun, Y. & Yuan, L., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac505.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  6. 2022
  7. Published

    HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

    Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  8. Published

    CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model

    Shang, J. & Sun, Y., Sep 2022, In: Briefings in Bioinformatics. 23, 5, bbac182.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib
  9. Published

    Accurate identification of bacteriophages from metagenomic data using Transformer

    Shang, J., Tang, X., Guo, R. & Sun, Y., Jul 2022, In: Briefings in Bioinformatics. 23, 4, bbac258.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib
  10. Published

    RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data

    Tang, X., Shang, J. & Sun, Y., Mar 2022, In: Briefings in Bioinformatics. 23, 2, bbac011.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  11. Published

    Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework

    Zhu, Y., Shang, J., Peng, C. & Sun, Y., 2022, In: Frontiers in Microbiology. 13, 1032186.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  12. 2021
  13. Published

    Bacteriophage classification for assembled contigs using Graph Convolutional Network

    Shang, J., Jiang, J. & Sun, Y., Jul 2021, ISMB/ECCB 2021 Proceedings. Oxford University Press, p. i25-i33 9 p. (Bioinformatics; vol. 37, no. Suppl. 1).

    Research output: Chapters, Conference Papers, Creative and Literary Works (RGC: 12, 32, 41, 45) › 32_Refereed conference paper (with ISBN/ISSN) › peer-review

    Scopus citations: 13
    Check@CityULib
  14. Published

    CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning

    Shang, J. & Sun, Y., May 2021, In: Methods. 189, p. 95-103 9 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 11
    Check@CityULib
  15. Published

    Improving protein domain classification for third-generation sequencing reads using deep learning

    Du, N., Shang, J. & Sun, Y., 2021, In: BMC Genomics. 22, 251.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib
  16. Published

    Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning

    Shang, J. & Sun, Y., 2021, In: BMC Biology. 19, 1, 250.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 4
    Check@CityULib
  17. 2019
  18. Published

    A binning tool to reconstruct viral haplotypes from assembled contigs

    Chen, J., Shang, J., Wang, J. & Sun, Y., 2019, In: BMC Bioinformatics. 20, 544.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib