Personal profile
Author IDs
ORCID iD: 0000-0002-9028-5382
Research Interests/Areas
My research interests include the following topics:
- 3D genomics
- Epigenetics
- Machine learning
For academic collaborations, please contact [email protected]
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations from the last five years
Research output
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Aligned cross-modal integration and regulatory heterogeneity characterization of single-cell multiomic data with deep contrastive learning
Cheng, Y., Su, Y., Fan, Y., Yang, Y., Chen, X., Wang, F., Wong, K.-C. & Li, X., 2026, In: Genome Medicine. 18, 33 p., 10.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile1 Link opens in a new tab Citation (Scopus)1 Downloads (CityUHK Scholars) -
Orthogonal disentanglement of single-cell multi-omics reveals private and shared drivers of tissue development and pathogenesis
Fan, Y., Su, Y., Hao, G., Wang, F., Chen, X., Wong, K.-C. & Li, X., 24 Mar 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 12, e2519870123.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
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DeepNanoHi-C: deep learning enables accurate single-cell nanopore long-read data analysis and 3D genome interpretation
Ma, W. (Co-first Author), Wang, F. (Co-first Author), Fan, Y., Hao, G., Su, Y., Wong, K.-C. & Li, X., 22 Jul 2025, In: Nucleic acids research. 53, 13, 23 p., gkaf640.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile2 Link opens in a new tab Citations (Scopus)98 Downloads (CityUHK Scholars) -
scPER2P: Parameter-Efficient Single-Cell LLM for Translated Proteome Profiles
Wang, Y., Chen, X., Zheng, Z., Xie, W., Wang, F., Huang, L. & Wong, K. C., 2025, Neural Information Processing: 31st International Conference, ICONIP 2024, Auckland, New Zealand, December 2–6, 2024, Proceedings, Part V. Mahmud, M., Doborjeh, M., Wong, K., Leung, A. C. S., Doborjeh, Z. & Tanveer, M. (eds.). Singapore: Springer , p. 1-15 (Lecture Notes in Computer Science; vol. 15290).Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review
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Topological identification and interpretation for single-cell epigenetic regulation elucidation in multi-tasks using scAGDE
Hao, G., Fan, Y., Yu, Z., Su, Y., Zhu, H., Wang, F., Chen, X., Yang, Y., Wang, G., Wong, K.-C. & Li, X., 2025, In: Nature Communications. 16, 1691.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Open AccessFile8 Link opens in a new tab Citations (Scopus)32 Downloads (CityUHK Scholars)
Prizes
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Outstanding Academic Performance Award for Research Degree Students (non UGC-funded students)
WANG, F. (Recipient), 16 Aug 2023
Prize: RGC 64B - Prizes and awards
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Outstanding Academic Performance Award for Research Degree Students (non-local UGC-funded students)
WANG, F. (Recipient), 16 Aug 2022
Prize: RGC 64B - Prizes and awards
Thesis
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Exploring 3D Genome Organization with Deep Learning: Chromatin Architectural Feature Identification and Analysis
WANG, F. (Author), WONG, K. C. (Supervisor), 22 Oct 2024Student thesis: Doctoral Thesis