CAI Dehan (蔡德涵)

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Research Output

  1. 2024
  2. Published

    Towards more accurate microbial source tracking via non-negative matrix factorization (NMF)

    Huang, Z., Cai, D. & Sun, Y., Jul 2024, ISMB 2024 Proceedings. Oxford University Press, p. i68-i78 (Bioinformatics; vol. 40, no. Supplement_1).

    Research output: Chapters, Conference Papers, Creative and Literary Works › RGC 32 - Refereed conference paper (with host publication) › peer-review

    Check@CityULib
  3. 2023
  4. Published

    AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data

    Yu, R., Cai, D. & Sun, Y., Jan 2023, In: Bioinformatics. 39, 1, 8 p., btac827.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib
  5. 2022
  6. Published

    HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

    Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
    Check@CityULib
  7. Published

    Reconstructing viral haplotypes using long reads

    Cai, D. & Sun, Y., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2127–2134 8 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
    Check@CityULib
  8. Published

    VirStrain: a strain identification tool for RNA viruses

    Liao, H., Cai, D. & Sun, Y., 2022, In: Genome Biology. 23, 1, 38.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 7
    Check@CityULib
  9. 2021
  10. Published

    Inferring Differential Networks by Integrating Gene Expression Data With Additional Knowledge

    Liu, C., Cai, D., Zeng, W. & Huang, Y., Nov 2021, In: Frontiers in Genetics. 12, 760155.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  11. Published

    WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values

    Le Ou-Yang, Cai, D., Zhang, X. & Yan, H., Nov 2021, In: Briefings in Bioinformatics. 22, 6, bbab086.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib