PLoS Computational Biology

PLoS Computational Biology

ISSNs: 1553-734X, 1553-7358

Additional searchable ISSN (electronic): 1553-7358

Public Library of Science, United States

Scopus rating (2023): CiteScore 7.1 SJR 1.652 SNIP 1.085

Indexed in DOAJ

Journal

Journal Metrics
1 - 14 out of 14Page size: 20

Research Output

  1. 2024
  2. Published

    EPINEST, an agent-based model to simulate epidemic dynamics in large-scale poultry production and distribution networks

    Pinotti, F., Lourenço, J., Gupta, S., Gupta, S. D., Henning, J., Blake, D., Tomley, F., & 4 othersBarnett, T., Pfeiffer, D., Hoque, M. A. & Fournié, G., Feb 2024, In: PLoS Computational Biology. 20, 2, e1011375.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  3. 2023
  4. Published

    Time warping between main epidemic time series in epidemiological surveillance

    Morel, J., Morel, J. & Alvarez, L., Dec 2023, In: PLoS Computational Biology. 19, 12, 24 p., e1011757.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  5. Published

    Patch formation driven by stochastic effects of interaction between viruses and defective interfering particles

    Liang, Q., Yang, J., Fan, W. L. & Lo, W., Oct 2023, In: PLoS Computational Biology. 19, 10, e1011513.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  6. Learning from the past: A short term forecast method for the COVID-19 incidence curve

    Morel, J., Morel, J. & Alvarez, L., Jun 2023, In: PLoS Computational Biology. 19, 6, e1010790.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  7. 2022
  8. Published

    Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework

    Wang, Y., Hou, Z., Yang, Y., Wong, K. & Li, X., 2022, In: PLoS Computational Biology. 18, 12, e1010779.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
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  9. 2021
  10. Published

    The experience of teaching introductory programming skills to bioscientists in Brazil

    Zuvanov, L., Garcia, A. L. B., Correr, F. H., Bizarria, Jr, R., Da Costa Filho, A. P., Da Costa, A. H., Thomaz, A. T., & 16 othersPinheiro, A. L. M., Riaño-Pachón, D. M., Winck, F. V., Esteves, F. G., Margarido, G. R. A., Casagrande, G. M. S., Frajacomo, H. C., Martins, L., Cavalheiro, M. F., Grachet, N. G., Da Silva, R. G. C., Cerri, R., Ramos, R. T. J., De Medeiros, S. D. S., Tavares, T. V. & Dos Santos, R. A. C., Nov 2021, In: PLoS Computational Biology. 17, 11, e1009534.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 5
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  11. 2019
  12. Published

    ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages

    Chan, C., Pang, X., Zhang, Y., Niu, T., Yang, S., Zhao, D., Li, J., & 5 othersLu, L., Hsu, V. W., Zhou, J., Sun, F. & Fan, J., Jul 2019, In: PLoS Computational Biology. 15, 7, e1007081.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  13. 2017
  14. Published

    A modeling study of budding yeast colony formation and its relationship to budding pattern and aging

    Wang, Y., Lo, W. & Chou, C., Nov 2017, In: PLoS Computational Biology. 13, 11, e1005843.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 15
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  15. 2016
  16. Published

    Network Receptive Field Modeling Reveals Extensive Integration and Multi-feature Selectivity in Auditory Cortical Neurons

    Harper, N. S., Schoppe, O., Willmore, B. D. B., Cui, Z., Schnupp, J. W. H. & King, A. J., 1 Nov 2016, In: PLoS Computational Biology. 12, 11, e1005113.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 38
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  17. 2015

  18. Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

    Karr, J. R., Williams, A. H., Zucker, J. D., Raue, A., Steiert, B., Timmer, J., Kreutz, C., & 47 othersHu, Y., Baron, M., Bryson, K., Barker, B., Bogart, E., Wang, Y., Chandramohan, D., Huang, L., Zawack, K., Shestov, A. A., Makadia, H., DeCicco, D., Yin, A., Wang, M., Li, S. C., Swistak, M., Cygan, M., Kazakiewicz, D., Kursa, M. B., Korytkowski, P., Plewczynski, D., Yang, J., Li, Y., Tang, H., Wang, T., Liu, Y., Xie, Y., Xiao, G., Bello, J., Botero Rozo, D. O., Cañas-Duarte, S. J., Castro, J. C., Gomez, F., Valdes, I., Vivas, L. G., Bernal, A., Pedraza Leal, J. M., Restrepo, S., Muñoz, A. R., Wilkinson, S., Allgood, B. A., Bot, B. M., Hoff, B. R., Kellen, M. R., Covert, M. W., Stolovitzky, G. A. & Meyer, P., 1 May 2015, In: PLoS Computational Biology. 11, 5, e1004096.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 29
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  19. 2014

  20. A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data

    Zhang, Y., Sun, Y. & Cole, J. R., Aug 2014, In: PLoS Computational Biology. 10, 8, e1003737.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 28
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  21. 2012

  22. Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

    Wang, X., Castro, M. A., Mulder, K. W. & Markowetz, F., Jun 2012, In: PLoS Computational Biology. 8, 6, e1002566.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 15
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  23. 2011

  24. Dynamically-driven inactivation of the catalytic machinery of the sars 3C-like protease by the N214A mutation on the extra domain

    Shi, J., Han, N., Lim, L., Lua, S., Sivaraman, J., Wang, L., Mu, Y., & 1 othersSong, J., Feb 2011, In: PLoS Computational Biology. 7, 2, e1001084.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 33
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  25. 2010

  26. A bayesian approach to quantifying the effects of mass poultry vaccination upon the spatial and temporal dynamics of H5N1 in Northern Vietnam

    Walker, P. G. T., Cauchemez, S., Métras, R., Dung, D. H., Pfeiffer, D. & Ghani, A. C., Feb 2010, In: PLoS Computational Biology. 6, 2, e1000683.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 29
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