Nucleic Acids Research
Nucleic Acids Research
ISSNs: 0305-1048, 1362-4962
Additional searchable ISSN (electronic): 1362-4962
Oxford University Press, United Kingdom
Scopus rating (2023): CiteScore 27.1 SJR 7.048 SNIP 3.839
Indexed in DOAJ
Journal
Research Output
- 2025
- Published
Precise gene expression deconvolution in spatial transcriptomics with STged
Tu, J.-J., Yan, H., Zhang, X.-F. & Lin, Z., 28 Feb 2025, In: Nucleic acids research. 53, 4, gkaf087.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
RNA G-quadruplex structure-based PROTACs for targeted DHX36 protein degradation and gene activity modulation in mammalian cells
Zhang, K. (Co-first Author), Nie, Q. (Co-first Author), Li, M. (Co-first Author), Chen, X., Zhong, L., Dai, T. & Guo, X. & 5 others, , 10 Feb 2025, In: Nucleic Acids Research. 53, 3, gkaf039.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
- Published
GutMetaNet: An integrated database for exploring horizontal gene transfer and functional redundancy in the human gut microbiome
Jiang, Y. (Co-first Author), Wang, Y. (Co-first Author), Che, L. (Co-first Author), Yang, S. (Co-first Author), Zhang, X. (Co-first Author), Lin, Y. & Shi, Y. & 5 others, , 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D772-D782Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 2 - Published
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools
Li, Y. (Co-first Author), Feng, X. (Co-first Author), Chen, X. (Co-first Author), Yang, S., Zhao, Z., Chen, Y. & Li, S. C., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D179-D188Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 2 - 2024
- Published
Selective recognition of RNA G-quadruplex in vitro and in cells by L-aptamer–D-oligonucleotide conjugate
Zhao, H., Lau, H. L., Zhang, K. & Kwok, C. K., 11 Dec 2024, In: Nucleic acids research. 52, 22, p. 13544-13560Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing
Tan, L. (Co-first Author), Guo, Z. (Co-first Author), Shao, Y., Ye, L., Wang, M., Deng, X. & Chen, S. & 1 others, , 27 Aug 2024, In: Nucleic acids research. 52, 15, p. 8746-8762 17 p.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 4 - Published
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome
Wang, S. (Co-first Author), Jiang, Y. (Co-first Author), Che, L., Wang, R. H. & Li, S. C., 12 Aug 2024, In: Nucleic acids research. 52, 14, 22 p., e61.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation
Chen, N. (Co-first Author), Yu, J. (Co-first Author), Liu, Z., Meng, L., Li, X. & Wong, K.-C., 8 May 2024, In: Nucleic Acids Research. 52, 8, p. 4137-4150Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 1 - Published
The origin of different bending stiffness between double-stranded RNA and DNA revealed by magnetic tweezers and simulations
Dong, H.-L. (Co-first Author), Zhang, C. (Co-first Author), Dai, L., Zhang, Y., Zhang, X.-H. & Tan, Z.-J., 21 Mar 2024, In: Nucleic acids research. 52, 5, p. 2519-2529Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 8 - Published
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations
Wang, R. H. (Co-first Author), Yang, S. (Co-first Author), Liu, Z., Zhang, Y., Wang, X., Xu, Z. & Wang, J. & 1 others, , 5 Jan 2024, In: Nucleic acids research. 52, D1, p. D756–D761Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 39 - 2023
- Published
Selective targeting of parallel G-quadruplex structure using L-RNA aptamer
Ji, D., Yuan, J.-H., Chen, S.-B., Tan, J.-H. & Kwok, C. K., 27 Nov 2023, In: Nucleic acids research. 51, 21, p. 11439-11452Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 13 Assessing base-resolution DNA mechanics on the genome scale
Jiang, W.-J., Hu, C., Lai, F., Pang, W., Yi, X., Xu, Q. & Wang, H. & 11 others, , 13 Oct 2023, In: Nucleic Acids Research. 51, 18, p. 9552-9566Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 4- Published
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
Tang, X., Shang, J., Ji, Y. & Sun, Y., 25 Aug 2023, In: Nucleic Acids Research. 51, 15, e83.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 26 - Published
Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data
Wang, R. H., Wang, J. & Li, S. C., 25 Aug 2023, In: Nucleic acids research. 51, 15, e81.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 4 - Published
AlloReverse: multiscale understanding among hierarchical allosteric regulations
Zha, J. (Co-first Author), Li, Q. (Co-first Author), Liu, X. (Co-first Author), Lin, W. (Co-first Author), Wang, T. (Co-first Author), Wei, J. & Zhang, Z. & 8 others, , 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W33–W38Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 15 - Published
DeepAlloDriver: a deep learning-based strategy to predict cancer driver mutations
Song, Q. (Co-first Author), Li, M. (Co-first Author), Li, Q. (Co-first Author), Lu, X. (Co-first Author), Song, K., Zhang, Z. & Wei, J. & 10 others, , 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W129–W133Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 10 - Published
Incorporating cell hierarchy to decipher the functional diversity of single cells
Chen, L. & Li, S. C., 25 Jan 2023, In: Nucleic acids research. 51, 2, e9.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 10 - Published
TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization
Wang, X., Chen, L., Liu, W., Zhang, Y., Liu, D., Zhou, C. & Shi, S. & 6 others, , 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D1417–D1424Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 13 - 2022
- Published
5-Methyl-cytosine stabilizes DNA but hinders DNA hybridization revealed by magnetic tweezers and simulations
Zhao, X.-C., Dong, H.-L., Li, X.-L., Yang, H.-Y., Chen, X.-F., Dai, L. & Wu, W.-Q. & 2 others, , 28 Nov 2022, In: Nucleic acids research. 50, 21, p. 12344–12354Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 10 - Published
Detecting TAD-like domains from RNA-associated interactions
Zhang, Y. W., Chen, L. & Li, S. C., 26 Aug 2022, In: Nucleic Acids Research. 50, 15, e88.Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review
Scopus citations: 8