Nucleic Acids Research

Nucleic Acids Research

ISSNs: 0305-1048, 1362-4962

Additional searchable ISSN (electronic): 1362-4962

Oxford University Press, United Kingdom

Scopus rating (2023): CiteScore 27.1 SJR 7.048 SNIP 3.839

Indexed in DOAJ

Journal

Journal Metrics
1 - 20 out of 61Page size: 20

Research Output

  1. 2025
  2. Published

    Precise gene expression deconvolution in spatial transcriptomics with STged

    Tu, J.-J., Yan, H., Zhang, X.-F. & Lin, Z., 28 Feb 2025, In: Nucleic acids research. 53, 4, gkaf087.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  3. Published

    RNA G-quadruplex structure-based PROTACs for targeted DHX36 protein degradation and gene activity modulation in mammalian cells

    Zhang, K. (Co-first Author), Nie, Q. (Co-first Author), Li, M. (Co-first Author), Chen, X., Zhong, L., Dai, T. & Guo, X. & 5 others, Zhao, H., Lau, T.C.-K., Wang, H., Chen, S.-B. & Kwok, C. K., 10 Feb 2025, In: Nucleic Acids Research. 53, 3, gkaf039.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  4. Published

    GutMetaNet: An integrated database for exploring horizontal gene transfer and functional redundancy in the human gut microbiome

    Jiang, Y. (Co-first Author), Wang, Y. (Co-first Author), Che, L. (Co-first Author), Yang, S. (Co-first Author), Zhang, X. (Co-first Author), Lin, Y. & Shi, Y. & 5 others, Zou, N., Wang, S., Zhang, Y., Zhao, Z. & Li, S. C., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D772-D782

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  5. Published

    PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools

    Li, Y. (Co-first Author), Feng, X. (Co-first Author), Chen, X. (Co-first Author), Yang, S., Zhao, Z., Chen, Y. & Li, S. C., 6 Jan 2025, In: Nucleic acids research. 53, D1, p. D179-D188

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  6. 2024
  7. Published

    Selective recognition of RNA G-quadruplex in vitro and in cells by L-aptamer–D-oligonucleotide conjugate

    Zhao, H., Lau, H. L., Zhang, K. & Kwok, C. K., 11 Dec 2024, In: Nucleic acids research. 52, 22, p. 13544-13560

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  8. Published

    Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing

    Tan, L. (Co-first Author), Guo, Z. (Co-first Author), Shao, Y., Ye, L., Wang, M., Deng, X. & Chen, S. & 1 others, LI, R., 27 Aug 2024, In: Nucleic acids research. 52, 15, p. 8746-8762 17 p.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  9. Published

    Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome

    Wang, S. (Co-first Author), Jiang, Y. (Co-first Author), Che, L., Wang, R. H. & Li, S. C., 12 Aug 2024, In: Nucleic acids research. 52, 14, 22 p., e61.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  10. Published

    Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation

    Chen, N. (Co-first Author), Yu, J. (Co-first Author), Liu, Z., Meng, L., Li, X. & Wong, K.-C., 8 May 2024, In: Nucleic Acids Research. 52, 8, p. 4137-4150

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  11. Published

    The origin of different bending stiffness between double-stranded RNA and DNA revealed by magnetic tweezers and simulations

    Dong, H.-L. (Co-first Author), Zhang, C. (Co-first Author), Dai, L., Zhang, Y., Zhang, X.-H. & Tan, Z.-J., 21 Mar 2024, In: Nucleic acids research. 52, 5, p. 2519-2529

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 8
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  12. Published

    PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations

    Wang, R. H. (Co-first Author), Yang, S. (Co-first Author), Liu, Z., Zhang, Y., Wang, X., Xu, Z. & Wang, J. & 1 others, Li, S. C., 5 Jan 2024, In: Nucleic acids research. 52, D1, p. D756–D761

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 39
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  13. 2023
  14. Published

    Selective targeting of parallel G-quadruplex structure using L-RNA aptamer

    Ji, D., Yuan, J.-H., Chen, S.-B., Tan, J.-H. & Kwok, C. K., 27 Nov 2023, In: Nucleic acids research. 51, 21, p. 11439-11452

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 13
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  15. Assessing base-resolution DNA mechanics on the genome scale

    Jiang, W.-J., Hu, C., Lai, F., Pang, W., Yi, X., Xu, Q. & Wang, H. & 11 others, Zhou, J., Zhu, H., Zhong, C., Kuang, Z., Fan, R., Shen, J., Zhou, X., Wang, Y.-J., Wong, C. C. L., Zheng, X. & Wu, H.-J., 13 Oct 2023, In: Nucleic Acids Research. 51, 18, p. 9552-9566

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  16. Published

    PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer

    Tang, X., Shang, J., Ji, Y. & Sun, Y., 25 Aug 2023, In: Nucleic Acids Research. 51, 15, e83.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 26
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  17. Published

    Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data

    Wang, R. H., Wang, J. & Li, S. C., 25 Aug 2023, In: Nucleic acids research. 51, 15, e81.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  18. Published

    AlloReverse: multiscale understanding among hierarchical allosteric regulations

    Zha, J. (Co-first Author), Li, Q. (Co-first Author), Liu, X. (Co-first Author), Lin, W. (Co-first Author), Wang, T. (Co-first Author), Wei, J. & Zhang, Z. & 8 others, Lu, X., Wu, J., Ni, D., Song, K., Zhang, L., Lu, X., Lu, S. & Zhang, J., 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W33–W38

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 15
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  19. Published

    DeepAlloDriver: a deep learning-based strategy to predict cancer driver mutations

    Song, Q. (Co-first Author), Li, M. (Co-first Author), Li, Q. (Co-first Author), Lu, X. (Co-first Author), Song, K., Zhang, Z. & Wei, J. & 10 others, Zhang, L., Wei, J., Ye, Y., Zha, J., Zhang, Q., Gao, Q., Long, J., Liu, X., Lu, X. & Zhang, J., 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W129–W133

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 10
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  20. Published

    Incorporating cell hierarchy to decipher the functional diversity of single cells

    Chen, L. & Li, S. C., 25 Jan 2023, In: Nucleic acids research. 51, 2, e9.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 10
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  21. Published

    TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

    Wang, X., Chen, L., Liu, W., Zhang, Y., Liu, D., Zhou, C. & Shi, S. & 6 others, Dong, J., Lai, Z., Zhao, B., Zhang, W., Cheng, H. & Li, S., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D1417–D1424

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 13
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  22. 2022
  23. Published

    5-Methyl-cytosine stabilizes DNA but hinders DNA hybridization revealed by magnetic tweezers and simulations

    Zhao, X.-C., Dong, H.-L., Li, X.-L., Yang, H.-Y., Chen, X.-F., Dai, L. & Wu, W.-Q. & 2 others, Tan, Z.-J. & Zhang, X.-H., 28 Nov 2022, In: Nucleic acids research. 50, 21, p. 12344–12354

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 10
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  24. Published

    Detecting TAD-like domains from RNA-associated interactions

    Zhang, Y. W., Chen, L. & Li, S. C., 26 Aug 2022, In: Nucleic Acids Research. 50, 15, e88.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 8
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