Nucleic Acids Research

Nucleic Acids Research

ISSNs: 0305-1048, 1362-4962

Additional searchable ISSN (electronic): 1362-4962

Oxford University Press, United Kingdom

Scopus rating (2022): CiteScore 32.3 SJR 8.234 SNIP 4.663

Indexed in DOAJ

Journal

Journal Metrics

Research Output

  1. 2024
  2. Online published

    Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation

    Chen, N., Yu, J., Liu, Z., Meng, L., Li, X. & Wong, K., 4 Apr 2024, (Online published) In: Nucleic Acids Research. gkae210.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  3. Published

    PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations

    Wang, R. H., Yang, S., Liu, Z., Zhang, Y., Wang, X., Xu, Z., Wang, J., & 1 othersLi, S. C., 5 Jan 2024, In: Nucleic acids research. 52, D!, p. D756–D761

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  4. 2023
  5. Published

    Selective targeting of parallel G-quadruplex structure using L-RNA aptamer

    Ji, D., Yuan, J., Chen, S., Tan, J. & Kwok, C. K., 27 Nov 2023, In: Nucleic acids research. 51, 21, p. 11439-11452

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  6. Published

    PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer

    Tang, X., Shang, J., Ji, Y. & Sun, Y., 25 Aug 2023, In: Nucleic Acids Research. 51, 15, e83.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
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  7. Published

    Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data

    Wang, R. H., Wang, J. & Li, S. C., 25 Aug 2023, In: Nucleic acids research. 51, 15, e81.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  8. Published

    AlloReverse: multiscale understanding among hierarchical allosteric regulations

    Zha, J., Li, Q., Liu, X., Lin, W., Wang, T., Wei, J., Zhang, Z., & 8 othersLu, X., Wu, J., Ni, D., Song, K., Zhang, L., Lu, X., Lu, S. & Zhang, J., 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W33–W38

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 7
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  9. Published

    DeepAlloDriver: a deep learning-based strategy to predict cancer driver mutations

    Song, Q., Li, M., Li, Q., Lu, X., Song, K., Zhang, Z., Wei, J., & 10 othersZhang, L., Wei, J., Ye, Y., Zha, J., Zhang, Q., Gao, Q., Long, J., Liu, X., Lu, X. & Zhang, J., 5 Jul 2023, In: Nucleic acids research. 51, W1, p. W129–W133

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  10. Published

    Incorporating cell hierarchy to decipher the functional diversity of single cells

    Chen, L. & Li, S. C., 25 Jan 2023, In: Nucleic acids research. 51, 2, e9.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  11. Published

    TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

    Wang, X., Chen, L., Liu, W., Zhang, Y., Liu, D., Zhou, C., Shi, S., & 6 othersDong, J., Lai, Z., Zhao, B., Zhang, W., Cheng, H. & Li, S., 6 Jan 2023, In: Nucleic acids research. 51, D1, p. D1417–D1424

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  12. 2022
  13. Published

    5-Methyl-cytosine stabilizes DNA but hinders DNA hybridization revealed by magnetic tweezers and simulations

    Zhao, X., Dong, H., Li, X., Yang, H., Chen, X., Dai, L., Wu, W., & 2 othersTan, Z. & Zhang, X., 28 Nov 2022, In: Nucleic acids research. 50, 21, p. 12344–12354

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 4
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  14. Published

    Detecting TAD-like domains from RNA-associated interactions

    Zhang, Y. W., Chen, L. & Li, S. C., 26 Aug 2022, In: Nucleic Acids Research. 50, 15, e88.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  15. Published

    High-fidelity KKH variant of Staphylococcus aureus Cas9 nucleases with improved base mismatch discrimination

    Yuen, C. T. L., Thean, D. G. L., Chan, B. K. C., Zhou, P., Kwok, C. C. S., Chu, H. Y., Cheung, M. S. H., & 7 othersWang, B., Chan, Y. M., Mak, S. Y. L., Leung, A. Y., Choi, G. C. G., Zheng, Z. & Wong, A. S. L., 22 Feb 2022, In: Nucleic Acids Research. 50, 3, p. 1650-1660

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 9
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  16. Published

    Identification and targeting of G-quadruplex structures in MALAT1 long non-coding RNA

    Mou, X., Liew, S. W. & Kwok, C. K., 11 Jan 2022, In: Nucleic Acids Research. 50, 1, p. 397-410

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 13
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  17. 2021
  18. Published

    G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum

    Dumetz, F., Chow, E. Y., Harris, L. M., Liew, S. W., Jensen, A., Umar, M. I., Chung, B., & 3 othersChan, T. F., Merrick, C. J. & Kwok, C. K., 2 Dec 2021, In: Nucleic Acids Research. 49, 21, p. 12486-12501

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 9
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  19. Published

    SpecHap: a diploid phasing algorithm based on spectral graph theory

    YU, Y., Chen, L., Miao, X. & Li, S. C., 8 Nov 2021, In: Nucleic Acids Research. 49, 19, e114.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 6
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  20. Formation of artificial chromosomes in Caenorhabditis elegans and analyses of their segregation in mitosis, DNA sequence composition and holocentromere organization

    Lin, Z., Xie, Y., Nong, W., Ren, X., Li, R., Zhao, Z., Hui, J. H. L., & 1 othersYuen, K. W. Y., 20 Sept 2021, In: Nucleic acids research. 49, 16, p. 9174-9193 20 p.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
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  21. Published

    Circular L-RNA aptamer promotes target recognition and controls gene activity

    Ji, D., Lyu, K., Zhao, H. & Kwok, C. K., 21 Jul 2021, In: Nucleic Acids Research. 49, 13, p. 7280-7291

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 22
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  22. Published

    RNA G-quadruplexes (rG4s): Genomics and biological functions

    Lyu, K., Chow, E. Y., Mou, X., Chan, T. & Kwok, C. K., 4 Jun 2021, In: Nucleic Acids Research. 49, 10, p. 5426-5450

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 74
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  23. 2020
  24. Published

    Specific suppression of D-RNA G-quadruplex-protein interaction with an L-RNA aptamer

    Umar, M. I. & Kwok, C. K., 9 Oct 2020, In: Nucleic Acids Research. 48, 18, p. 10125-10141

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 25
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  25. Published

    Corrigendum: Oviz-Bio: a web-based platform for interactive cancer genomics data visualization

    Jia, W., Li, H., Li, S., Chen, L. & Li, S. C., 20 Aug 2020, In: Nucleic Acids Research. 48, 14, p. 8203-8204

    Research output: Journal Publications and ReviewsErratum

    Scopus citations: 3
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