Microbiome

Microbiome

ISSNs: 2049-2618

Additional searchable ISSN (electronic): 2049-2618

BioMed Central Ltd., United Kingdom

Scopus rating (2023): CiteScore 21.9 SJR 3.802 SNIP 2.725

Indexed in DOAJ

Journal

Journal Metrics
1 - 20 out of 26Page size: 20

Research Output

  1. 2024
  2. Published

    Diverse and specialized metabolic capabilities of microbes in oligotrophic built environments

    Tong, X., Luo, D., Leung, M. H. Y., Lee, J. Y. Y., Shen, Z., Jiang, W. & Mason, C. E. & 1 others, Lee, P. K. H., 2024, In: Microbiome. 12, 18 p., 198.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  3. Metatranscriptomics-guided genome-scale metabolic reconstruction reveals the carbon flux and trophic interaction in methanogenic communities

    Yan, W., Wang, D., Wang, Y., Wang, C., Chen, X., Liu, L. & Wang, Y. & 4 others, Li, Y.-Y., Kamagata, Y., Nobu, M. K. & Zhang, T., 2024, In: Microbiome. 12, 121.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  4. 2023
  5. Published

    High-resolution strain-level microbiome composition analysis from short reads

    Liao, H., Ji, Y. & Sun, Y., 2023, In: Microbiome. 11, 183.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 10
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  6. Published

    metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering

    Hao, C., Elias, J. E., Lee, P. K. H. & Lam, H., 2023, In: Microbiome. 11, 176.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  7. Published

    Skin microbiome differentiates into distinct cutotypes with unique metabolic functions upon exposure to polycyclic aromatic hydrocarbons

    Leung, M. H. Y., Tong, X., Shen, Z., Du, S., Bastien, P., Appenzeller, B. M. R. & Betts, R. J. & 7 others, Mezzache, S., Bourokba, N., Cavusoglu, N., Aguilar, L., Misra, N., Clavaud, C. & Lee, P. K. H., 2023, In: Microbiome. 11, 124.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 9
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  8. 2022

  9. Elucidating the role of the gut microbiota in the physiological effects of dietary fiber

    Deehan, E. C., Zhang, Z., Riva, A., Armet, A. M., Perez-Muñoz, M. E., Nguyen, N. K. & Krysa, J. A. & 18 others, Seethaler, B., Zhao, Y.-Y., Cole, J., Li, F., Hausmann, B., Spittler, A., Nazare, J.-A., Delzenne, N. M., Curtis, J. M., Wismer, W. V., Proctor, S. D., Bakal, J. A., Bischoff, S. C., Knights, D., Field, C. J., Berry, D., Prado, C. M. & Walter, J., 2022, In: Microbiome. 10, 77.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 60
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  10. 2021
  11. Published

    Characterization of the public transit air microbiome and resistome reveals geographical specificity

    Leung, M. H. Y., Tong, X., Bøifot, K. O., Bezdan, D., Butler, D. J., Danko, D. C. & Gohli, J. & 12 others, Green, D. C., Hernandez, M. T., Kelly, F. J., Levy, S., Mason-Buck, G., Nieto-Caballero, M., Syndercombe-Court, D., Udekwu, K., Young, B. G., Mason, C. E., Dybwad, M. & Lee, P. K. H., 2021, In: Microbiome. 9, 112.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 42
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  12. Published

    Diurnal variation in the human skin microbiome affects accuracy of forensic microbiome matching

    Wilkins, D., Tong, X., Leung, M. H. Y., Mason, C. E. & Lee, P. K. H., 2021, In: Microbiome. 9, 129.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 25
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  13. Published

    Metagenomic insights into the microbial communities of inert and oligotrophic outdoor pier surfaces of a coastal city

    Tong, X., Leung, M. H. Y., Shen, Z., Lee, J. Y. Y., Mason, C. E. & Lee, P. K. H., 2021, In: Microbiome. 9, 213.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 13
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  14. 2020
  15. Published

    A comprehensive investigation of metagenome assembly by linked-read sequencing

    Zhang, L., Fang, X., Liao, H., Zhang, Z., Zhou, X., Han, L. & Chen, Y. & 2 others, Qiu, Q. & Li, S. C., 2020, In: Microbiome. 8, 156.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 13
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  16. Published

    Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

    Nobu, M. K., Narihiro, T., Mei, R., Kamagata, Y., Lee, P. K. H., Lee, P.-H. & McInerney, M. J. & 1 others, Liu, W.-T., 2020, In: Microbiome. 8, 16 p., 111.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 57
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  17. Published

    Changes of the human skin microbiota upon chronic exposure to polycyclic aromatic hydrocarbon pollutants

    Leung, M. H. Y., Tong, X., Bastien, P., Guinot, F., Tenenhaus, A., Appenzeller, B. M. R. & Betts, R. J. & 6 others, Mezzache, S., Li, J., Bourokba, N., Breton, L., Clavaud, C. & Lee, P. K. H., 2020, In: Microbiome. 8, 17 p., 100.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 71
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  18. Published

    Predictable modulation of cancer treatment outcomes by the gut microbiota

    Heshiki, Y., Vazquez-Uribe, R., Li, J., Ni, Y., Quainoo, S., Imamovic, L. & Li, J. & 6 others, Sorensen, M., Chow, B. K. C., Weiss, G. J., Xu, A., Sommer, M. O. A. & Panagiotou, G., 2020, In: Microbiome. 8, 28.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 114
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  19. 2019

  20. Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle

    Li, F., Li, C., Chen, Y., Liu, J., Zhang, C., Irving, B. & Fitzsimmons, C. & 2 others, Plastow, G. & Guan, L. L., 13 Jun 2019, In: Microbiome. 7, 1, 92.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 278
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  21. Published

    Mining, analyzing, and integrating viral signals from metagenomic data

    Zheng, T., Li, J., Ni, Y., Kang, K., Misiakou, M.-A., Imamovic, L. & Chow, B. K. C. & 4 others, Rode, A. A., Bytzer, P., Sommer, M. & Panagiotou, G., 19 Mar 2019, In: Microbiome. 7, 42.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 56
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  22. Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle 06 Biological Sciences 0604 Genetics 06 Biological Sciences 0605 Microbiology

    Li, F., Hitch, T. C. A., Chen, Y., Creevey, C. J. & Guan, L. L., 14 Jan 2019, In: Microbiome. 7, 1, 6.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 164
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  23. 2018
  24. Published

    A comparison of methods used to unveil the genetic and metabolic pool in the built environment

    Gomez-Silvan, C., Leung, M. H. Y., Grue, K. A., Kaur, R., Tong, X., Lee, P. K. H. & Andersen, G. L., 2018, In: Microbiome. 6, 71.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 19
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  25. Published

    Individual and household attributes influence the dynamics of the personal skin microbiota and its association network

    Leung, M. H. Y., Tong, X., Wilkins, D., Cheung, H. H. L. & Lee, P. K. H., 2018, In: Microbiome. 6, 26.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 42
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  26. Published

    Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

    Liu, X., Li, M., Castelle, C. J., Probst, A. J., Zhou, Z., Pan, J. & Liu, Y. & 2 others, Banfield, J. F. & Gu, J.-D., 2018, In: Microbiome. 6, 102.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 178
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  27. 2017
  28. Published

    City-scale distribution and dispersal routes of mycobiome in residences

    Tong, X., Leung, M. H. Y., Wilkins, D. & Lee, P. K. H., 2017, In: Microbiome. 5, 131.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 23
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