Briefings in Bioinformatics

Briefings in Bioinformatics

ISSNs: 1467-5463, 1477-4054

Oxford University Press, United Kingdom

Scopus rating (2022): CiteScore 10.9 SJR 2.163 SNIP 1.732

Journal

Journal Metrics

Research Output

  1. 2023
  2. Published

    PhaGenus: genus-level classification of bacteriophages using a Transformer model

    Guan, J., Peng, C., Shang, J., Tang, X. & Sun, Y., Nov 2023, In: Briefings in Bioinformatics. 24, 6, bbad408.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  3. Published

    HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses

    Yu, R., Abdullah, S. M. U. & Sun, Y., Sept 2023, In: Briefings in Bioinformatics. 24, 5, bbad264.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  4. Published

    DCiPatho: deep cross-fusion networks for genome scale identification of pathogens

    Jiang, G., Zhang, J., Zhang, Y., Yang, X., Li, T., Wang, N., Chen, X., & 5 othersZhao, F., Wei, Z., Xu, Y., Shen, Q. & Xue, W., Jul 2023, In: Briefings in Bioinformatics. 24, 4, bbad194.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  5. Published

    DeepAlgPro: an interpretable deep neural network model for predicting allergenic proteins

    He, C., Ye, X., Yang, Y., Hu, L., Si, Y., Zhao, X., Chen, L., & 4 othersFang, Q., Wei, Y., Wu, F. & Ye, G., Jul 2023, In: Briefings in Bioinformatics. 24, 4, bbad246.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  6. Published

    Deep transfer learning for clinical decision-making based on high-throughput data: comprehensive survey with benchmark results

    Toseef, M., Petinrin, O. O., Wang, F., Rahaman, S., Liu, Z., LI, X. & WONG, K., Jul 2023, In: Briefings in Bioinformatics. 24, 4, bbad254.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  7. Published

    SC-AIR-BERT: a pre-trained single-cell model for predicting the antigen-binding specificity of the adaptive immune receptor

    Zhao, Y., Su, X., Zhang, W., Mai, S., Qin, C., Yu, R., He, B., & 1 othersYao, J., Jul 2023, In: Briefings in Bioinformatics. 24, 4, bbad191.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  8. Published

    Quantitative annotations of T-Cell repertoire specificity

    Luo, J., Wang, X., Zou, Y., Chen, L., Liu, W., Zhang, W. & Li, S. C., May 2023, In: Briefings in Bioinformatics. 24, 3, bbad175.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  9. Published

    Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires

    Jiang, Y. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad038.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  10. Published

    IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data

    Zhang, W., Ju, J., Zhou, Y., Xiong, T., Wang, M., Li, C., Lu, S., & 4 othersLu, Z., Lin, L., Liu, X. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, 10 p., bbad080.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

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  11. Published

    SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency

    Pu, J., Wang, B., Liu, X., Chen, L. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad026.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  12. Published

    TEINet: a deep learning framework for prediction of TCR-epitope binding specificity

    Jiang, Y., Huo, M. & Cheng Li, S., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad086.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  13. Published

    Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire

    Zhao, Y., He, B., Xu, Z., Zhang, Y., Zhao, X., Huang, Z., Yang, F., & 4 othersWang, L., Duan, L., Song, J. & Yao, J., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac555.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  14. Published

    PhaTYP: predicting the lifestyle for bacteriophages using BERT

    Shang, J., Tang, X. & Sun, Y., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac487.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 25
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  15. Published

    Virus classification for viral genomic fragments using PhaGCN2

    Jiang, J., Yuan, W., Shang, J., Shi, Y., Yang, L., Liu, M., Zhu, P., & 3 othersJin, T., Sun, Y. & Yuan, L., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac505.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 20
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  16. 2022
  17. Published

    CoaDTI: multi-modal co-attention based framework for drug-target interaction annotation

    Huang, L., Lin, J., Liu, R., Zheng, Z., Meng, L., Chen, X., Li, X., & 1 othersWong, K., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac446.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 15
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  18. Published

    Deep learning identifies explainable reasoning paths of mechanism of action for drug repurposing from multilayer biological network

    Yang, J., Li, Z., Wu, W. K. K., Yu, S., Xu, Z., Chu, Q. & Zhang, Q., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac469.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
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  19. Published

    Line graph attention networks for predicting disease-associated Piwi-interacting RNAs

    Zheng, K., Zhang, X., Wang, L., You, Z., Zhan, Z. & Li, H., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac393.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  20. Published

    CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model

    Shang, J. & Sun, Y., Sept 2022, In: Briefings in Bioinformatics. 23, 5, bbac182.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 22
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  21. Published

    Prediction of biomarker-disease associations based on graph attention network and text representation

    Yang, M., Huang, Z., Gu, W., Han, K., Pan, W., Yang, X. & Zhu, Z., Sept 2022, In: Briefings in Bioinformatics. 23, 5, 14 p., bbac298.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
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  22. Published

    SFGAE: a self-feature-based graph autoencoder model for miRNA-disease associations prediction

    Ma, M., Na, S., Zhang, X., Chen, C. & Xu, J., Sept 2022, In: Briefings in Bioinformatics. 23, 5, bbac340.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 11
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