Briefings in Bioinformatics

Briefings in Bioinformatics

ISSNs: 1467-5463, 1477-4054

Oxford University Press, United Kingdom

Scopus rating (2021): CiteScore 11.6 SJR 3.032 SNIP 3.293

Journal

Journal Metrics
1 - 20 out of 48Page size: 20

Research Output

  1. 2023
  2. Published

    Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires

    Jiang, Y. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad038.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  3. Published

    IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data

    Zhang, W., Ju, J., Zhou, Y., Xiong, T., Wang, M., Li, C., Lu, S., & 4 othersLu, Z., Lin, L., Liu, X. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, 10 p., bbad080.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  4. Published

    SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency

    Pu, J., Wang, B., Liu, X., Chen, L. & Li, S. C., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad026.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  5. Published

    TEINet: a deep learning framework for prediction of TCR-epitope binding specificity

    Jiang, Y., Huo, M. & Cheng Li, S., Mar 2023, In: Briefings in Bioinformatics. 24, 2, bbad086.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  6. Published

    Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire

    Zhao, Y., He, B., Xu, Z., Zhang, Y., Zhao, X., Huang, Z., Yang, F., & 4 othersWang, L., Duan, L., Song, J. & Yao, J., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac555.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  7. Published

    PhaTYP: predicting the lifestyle for bacteriophages using BERT

    Shang, J., Tang, X. & Sun, Y., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac487.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
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  8. Published

    Virus classification for viral genomic fragments using PhaGCN2

    Jiang, J., Yuan, W., Shang, J., Shi, Y., Yang, L., Liu, M., Zhu, P., & 3 othersJin, T., Sun, Y. & Yuan, L., Jan 2023, In: Briefings in Bioinformatics. 24, 1, bbac505.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  9. 2022
  10. Published

    CoaDTI: multi-modal co-attention based framework for drug-target interaction annotation

    Huang, L., Lin, J., Liu, R., Zheng, Z., Meng, L., Chen, X., Li, X., & 1 othersWong, K., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac446.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  11. Published

    Deep learning identifies explainable reasoning paths of mechanism of action for drug repurposing from multilayer biological network

    Yang, J., Li, Z., Wu, W. K. K., Yu, S., Xu, Z., Chu, Q. & Zhang, Q., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac469.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  12. Published

    Line graph attention networks for predicting disease-associated Piwi-interacting RNAs

    Zheng, K., Zhang, X., Wang, L., You, Z., Zhan, Z. & Li, H., Nov 2022, In: Briefings in Bioinformatics. 23, 6, bbac393.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  13. Published

    CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model

    Shang, J. & Sun, Y., Sep 2022, In: Briefings in Bioinformatics. 23, 5, bbac182.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
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  14. Published

    Prediction of biomarker-disease associations based on graph attention network and text representation

    Yang, M., Huang, Z., Gu, W., Han, K., Pan, W., Yang, X. & Zhu, Z., Sep 2022, In: Briefings in Bioinformatics. 23, 5, 14 p., bbac298.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  15. Published

    SFGAE: a self-feature-based graph autoencoder model for miRNA-disease associations prediction

    Ma, M., Na, S., Zhang, X., Chen, C. & Xu, J., Sep 2022, In: Briefings in Bioinformatics. 23, 5, bbac340.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  16. Published

    Accurate identification of bacteriophages from metagenomic data using Transformer

    Shang, J., Tang, X., Guo, R. & Sun, Y., Jul 2022, In: Briefings in Bioinformatics. 23, 4, bbac258.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib

  17. BatchDTA: implicit batch alignment enhances deep learning-based drug–target affinity estimation

    Luo, H., Xiang, Y., Fang, X., Lin, W., Wang, F., Wu, H. & Wang, H., Jul 2022, In: Briefings in Bioinformatics. 23, 4, bbac260.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  18. Published

    Resolving single-cell copy number profiling for large datasets

    Wang, R., Zhang, Y., Wang, M., Feng, X., Wang, J. & Li, S. C., Jul 2022, In: Briefings in Bioinformatics. 23, 4, bbac264.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  19. Published

    Reducing healthcare disparities using multiple multiethnic data distributions with fine-tuning of transfer learning

    Toseef, M., Li, X. & Wong, K., May 2022, In: Briefings in Bioinformatics. 23, 3, bbac078.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  20. Published

    HCRNet: High-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network

    Yang, Y., Hou, Z., Wang, Y., Ma, H., Sun, P., Ma, Z., Wong, K., & 1 othersLi, X., Mar 2022, In: Briefings in Bioinformatics. 23, 2, bbac027.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 5
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  21. Published

    Proteoform identification based on top-down tandem mass spectra with peak error corrections

    Zhan, Z. & Wang, L., Mar 2022, In: Briefings in Bioinformatics. 23, 2, bbab599.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  22. Published

    RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data

    Tang, X., Shang, J. & Sun, Y., Mar 2022, In: Briefings in Bioinformatics. 23, 2, bbac011.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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