BMC Bioinformatics

BMC Bioinformatics

ISSNs: 1471-2105

BioMed Central Ltd., United Kingdom

Scopus rating (2020): CiteScore 5.7 SJR 1.567 SNIP 1.276

Indexed in DOAJ

Journal

Journal Metrics

Research Output

  1. 2016
  2. Published

    Protein complex detection based on partially shared multi-view clustering

    Ou-Yang, L., Zhang, X., Dai, D., Wu, M., Zhu, Y., Liu, Z. & Yan, H., 13 Sep 2016, In: BMC Bioinformatics. 17, 1, 371.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 6
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  3. Published

    Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks

    Zhang, X., Ou-Yang, L., Dai, D., Wu, M., Zhu, Y. & Yan, H., 9 Sep 2016, In: BMC Bioinformatics. 17, 1, 358.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 10
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  4. Published

    A two-layer integration framework for protein complex detection

    Ou-Yang, L., Wu, M., Zhang, X., Dai, D., Li, X. & Yan, H., 24 Feb 2016, In: BMC Bioinformatics. 17, 1, 100.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 14
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  5. Published

    Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer

    Wu, M., Zhang, X., Dai, D., Ou-Yang, L., Zhu, Y. & Yan, H., 2016, In: BMC Bioinformatics. 17, 1, 108.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 17
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  6. solveME: fast and reliable solution of nonlinear ME models

    Yang, L., Ma, D., Ebrahim, A., Lloyd, C. J., Saunders, M. A. & Palsson, B. O., 2016, In: BMC Bioinformatics. 17, 10 p., 391.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 28
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  7. 2015
  8. Published

    EGFR Mutant Structural Database: Computationally predicted 3D structures and the corresponding binding free energies with gefitinib and erlotinib

    Ma, L., Wang, D. D., Huang, Y., Yan, H., Wong, M. P. & Lee, V. H. F., 2015, In: BMC Bioinformatics. 16, 1, 85.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 25
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  9. 2014
  10. Online published

    Detecting overlapping protein complexes based on a generative model with functional and topological properties

    Zhang, X., Dai, D., Ou-Yang, L. & Yan, H., 13 Jun 2014, (Online published) In: BMC Bioinformatics. 15, 1, 186.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 35
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  11. 2013
  12. Published

    A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images

    Chen, L., Chan, L. L. H., Zhao, Z. & Yan, H., 19 Nov 2013, In: BMC Bioinformatics. 14, 1, 328.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  13. Efficient known ncRNA search including pseudoknots

    Yuan, C. & Sun, Y., 21 Jan 2013, In: BMC Bioinformatics. 14, Suppl 2, S25.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 1
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  14. Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM

    Achawanantakun, R. & Sun, Y., 21 Jan 2013, In: BMC Bioinformatics. 14, S1.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 6
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  15. PASTA: splice junction identification from RNA-Sequencing data

    Tang, S. & Riva, A., 2013, In: BMC Bioinformatics. 14, 116.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 12
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  16. 2012
  17. Published

    Protein-protein binding site identification by enumerating the configurations

    Guo, F., Li, S. C., Wang, L. & Zhu, D., 6 Jul 2012, In: BMC Bioinformatics. 13, 1, 158.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 38
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  18. Published

    A fast tool for minimum hybridization networks

    Chen, Z., Wang, L. & Yamanaka, S., 2 Jul 2012, In: BMC Bioinformatics. 13, 1, 155.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 10
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  19. Published

    Computing the protein binding sites

    Guo, F. & Wang, L., 25 Jun 2012, In: BMC Bioinformatics. 13, Supp. 10, p. 1-10 S2.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 7
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  20. Codon Deviation Coefficient: A novel measure for estimating codon usage bias and its statistical significance

    Zhang, Z., Li, J., Cui, P., Ding, F., Li, A., Townsend, J. P. & Yu, J., 22 Mar 2012, In: BMC Bioinformatics. 13, 1, 43.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 41
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  21. Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy

    Sun, Y., Aljawad, O., Lei, J. & Liu, A., 21 Mar 2012, In: BMC Bioinformatics. 13, SUPPL.3, S12.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 3
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  22. Published

    Identifying mutation regions for closely related individuals without a known pedigree

    Cui, W. & Wang, L., 2012, In: BMC Bioinformatics. 13, 146.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 2
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  23. Published

    Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study

    Jiang, J. Q. & Wu, M., 2012, In: BMC Bioinformatics. 13, Suppl 10, S20.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 19
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  24. 2011
  25. HMM-FRAME: Accurate protein domain classification for metagenomic sequences containing frameshift errors

    Zhang, Y. & Sun, Y., 24 May 2011, In: BMC Bioinformatics. 12, 198.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 46
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  26. Incorporating Ab Initio energy into threading approaches for protein structure prediction

    Shao, M., Wang, S., Wang, C., Yuan, X., Li, S. C., Zheng, W. & Bu, D., 15 Feb 2011, In: BMC Bioinformatics. 12, SUPPL. 1, S54.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 5
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