Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2021): CiteScore 13.4 SJR 3.4 SNIP 2.272

Journal

Journal Metrics

Research Output

  1. 2022
  2. Published

    Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization

    Jin, K., Li, B., Yan, H. & Zhang, X., 15 Jun 2022, In: Bioinformatics. 38, 12, p. 3222–3230

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  3. Published

    GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering

    Lu, Y., Yu, Z., Wang, Y., Ma, Z., Wong, K. & Li, X., 1 Jun 2022, In: Bioinformatics. 38, 11, p. 3020-3028

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  4. Published

    mzMD: visualization-oriented MS data storage and retrieval

    Yang, R., Ma, J., Zhang, S., Zheng, Y., Wang, L. & Zhu, D., 15 Apr 2022, In: Bioinformatics. 38, 5, p. 2333–2340 btac098.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  5. Published

    Reconstructing viral haplotypes using long reads

    Cai, D. & Sun, Y., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2127–2134 8 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 1
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  6. Published

    EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network

    Wang, Y., Yang, Y., Ma, Z., Wong, K. & Li, X., 1 Feb 2022, In: Bioinformatics. 38, 3, p. 678-686

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  7. 2021
  8. Published

    Differential network analysis by simultaneously considering changes in gene interactions and gene expression

    Tu, J., Le Ou-Yang, Yuan Zhu, Yan, H., Hong Qin & Zhang, X., 1 Dec 2021, In: Bioinformatics. 37, 23, p. 4414-4423

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 3
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  9. Published

    CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA

    Rahaman, S., Li, X., Yu, J. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3319–3327

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 1
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  10. Published

    Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine

    Liu, L., Chen, X. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3099–3105 7 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  11. Published

    Proteo-chemometrics interaction fingerprints of protein-ligand complexes predict binding affinity

    Wang, D. D., Xie, H. & Yan, H., 1 Sep 2021, In: Bioinformatics. 37, 17, p. 2570-2579

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 5
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  12. Published

    HiSCF: leveraging higher-order structures for clustering analysis in biological networks

    Hu, L., Zhang, J., Pan, X., Yan, H. & You, Z., 15 Feb 2021, In: Bioinformatics. 37, 4, p. 542-550

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 27
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  13. 2020
  14. Published

    PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data

    Wang, S., Jiang, Y. & Li, S., Dec 2020, In: Bioinformatics. 36, 22-23, p. 5499–5506

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 4
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  15. Published

    scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation

    Jin, K., Ou-Yang, L., Zhao, X., Yan, H. & Zhang, X., 15 May 2020, In: Bioinformatics. 36, 10, p. 3131-3138

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  16. Published

    Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity

    Tu, J., Ou-Yang, L., Yan, H., Zhang, X. & Qin, H., 1 May 2020, In: Bioinformatics. 36, 9, p. 2755-2762

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 4
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  17. Published

    Context awareness and embedding for biomedical event extraction

    Yan, S. & Wong, K., 15 Jan 2020, In: Bioinformatics. 36, 2, p. 637-643

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 11
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  18. 2019
  19. Published

    EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning

    Zhang, X., Ou-Yang, L., Yang, S., Zhao, X., Hu, X. & Yan, H., 15 Nov 2019, In: Bioinformatics. 35, 22, p. 4827-4829

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 16
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  20. Published

    DiffNetFDR: differential network analysis with false discovery rate control

    Zhang, X., Ou-Yang, L., Yang, S., Hu, X. & Yan, H., 1 Sep 2019, In: Bioinformatics. 35, 17, p. 3184-3186

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  21. Published

    Single-cell RNA-seq interpretations using evolutionary multiobjective ensemble pruning

    Li, X., Zhang, S. & Wong, K., 15 Aug 2019, In: Bioinformatics. 35, 16, p. 2809-2817 9 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 16
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  22. Published

    Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications

    Zhang, S., Li, X., Lin, Q. & Wong, K., 1 Apr 2019, In: Bioinformatics. 35, 7, p. 1108-1115

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 13
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  23. 2018
  24. Published

    Off-target predictions in CRISPR-Cas9 gene editing using deep learning

    Lin, J. & Wong, K., Sep 2018, In: Bioinformatics. 34, 17, p. i656-i663

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 65
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  25. Published

    Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data

    Guo, F., Wang, D. & Wang, L., 15 Jun 2018, In: Bioinformatics. 34, 12, p. 2012-2018

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 18
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