Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2023): CiteScore 11.2 SJR 2.574 SNIP 1.547

Indexed in DOAJ

Journal

Journal Metrics
1 - 20 out of 92Page size: 20

Research Output

  1. 2024
  2. Published

    Deep learning-based enhancement of fluorescence labeling for accurate cell lineage tracing during embryogenesis

    Li, Z., Xie, D., Ma, Y., Zhao, C., You, S., Yan, H. & Zhao, Z., Nov 2024, In: Bioinformatics. 40, 11, 8 p., btae626.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  3. Published

    VirTAXA: Enhancing RNA virus taxonomic classification with remote homology search and tree-based validation

    Zhu, Y., Chen, G. & Sun, Y., Oct 2024, In: Bioinformatics. 40, 10, btae575.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  4. Published

    Accurate and efficient protein embedding using multi-teacher distillation learning

    Shang, J., Peng, C., Ji, Y., Guan, J., Cai, D., Tang, X. & Sun, Y., Sept 2024, In: Bioinformatics. 40, 9, btae567.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  5. Published

    Unraveling spatial domain characterization in spatially resolved transcriptomics with robust graph contrastive clustering

    Zhang, Y., Yu, Z., Wong, K. & Li, X., Jul 2024, In: Bioinformatics. 40, 7, btae451.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  6. Published

    Coding genomes with gapped pattern graph convolutional network

    Wang, R. H., Ng, Y. K., Zhang, X., Wang, J. & Li, S. C., Apr 2024, In: Bioinformatics. 40, 4, btae188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  7. Published

    Fast peak error correction algorithms for proteoform identification using top-down tandem mass spectra

    Zhan, Z. & Wang, L., Apr 2024, In: Bioinformatics. 40, 4, 8 p., btae149.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  8. Published

    scDMV: a zero–one inflated beta mixture model for DNA methylation variability with scBS-seq data

    Zhou, Y., Zhang, Y., Peng, M., Zhang, Y., Li, C., Shu, L., Hu, Y., & 2 othersSu, J. & Xu, J., Jan 2024, In: Bioinformatics. 40, 1, btad772.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  9. 2023
  10. Published

    GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data

    Liao, H., Shang, J. & Sun, Y., Dec 2023, In: Bioinformatics. 39, 12, btad747.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  11. Published

    Automated exploitation of deep learning for cancer patient stratification across multiple types

    Sun, P., Fan, S., Li, S., Zhao, Y., Lu, C., Wong, K. & Li, X., Nov 2023, In: Bioinformatics. 39, 11, btad654.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib

  12. MIX-TPI: a flexible prediction framework for TCR-pMHC interactions based on multimodal representations

    Yang, M., Huang, Z., Zhou, W., Ji, J., Zhang, J., He, S. & Zhu, Z., Aug 2023, In: Bioinformatics. 39, 8, btad475.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  13. Published

    Chromothripsis Detection with Multiple Myeloma Patients Based on Deep Graph Learning

    Yu, J., Chen, N., Zheng, Z., Gao, M., Liang, N. & Wong, K., Jul 2023, In: Bioinformatics. 39, 7, 9 p., btad422.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  14. Published

    HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer

    Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  15. Published

    Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping

    Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  16. Published

    VirBot: an RNA viral contig detector for metagenomic data

    Chen, G., Tang, X., Shi, M. & Sun, Y., Mar 2023, In: Bioinformatics. 39, 3, btad093.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 8
    Check@CityULib
  17. Published

    PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations

    Yu, X., Xiao, J., Cai, M., Jiao, Y., Wan, X., Liu, J. & Yang, C., Feb 2023, In: Bioinformatics. 39, 2, btad068.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
  18. Published

    scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering

    Wang, Y., Yu, Z., Li, S., Bian, C., Liang, Y., Wong, K. & Li, X., Feb 2023, In: Bioinformatics. 39, 2, btad075.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 9
    Check@CityULib
  19. Published

    AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data

    Yu, R., Cai, D. & Sun, Y., Jan 2023, In: Bioinformatics. 39, 1, 8 p., btac827.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
    Check@CityULib
  20. Published

    EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning

    Tu, J., Li, H., Yan, H. & Zhang, X., Jan 2023, In: Bioinformatics. 39, 1, btac825.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 11
    Check@CityULib
  21. 2022
  22. Published

    HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

    Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
    Check@CityULib
  23. Published

    scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information

    Su, Y., Wang, F., Zhang, S., Liang, Y., Wong, K. & Li, X., 1 Oct 2022, In: Bioinformatics. 38, 19, p. 4537–4545

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
    Check@CityULib
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