Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2021): CiteScore 13.4 SJR 3.4 SNIP 2.272

Journal

Journal Metrics
1 - 20 out of 81Page size: 20

Research Output

  1. 2023
  2. Published

    HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer

    Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  3. Published

    Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping

    Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  4. Published

    VirBot: an RNA viral contig detector for metagenomic data

    Chen, G., Tang, X., Shi, M. & Sun, Y., Mar 2023, In: Bioinformatics. 39, 3, btad093.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  5. Published

    PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations

    Yu, X., Xiao, J., Cai, M., Jiao, Y., Wan, X., Liu, J. & Yang, C., Feb 2023, In: Bioinformatics. 39, 2, btad068.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  6. Published

    scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering

    Wang, Y., Yu, Z., Li, S., Bian, C., Liang, Y., Wong, K. & Li, X., Feb 2023, In: Bioinformatics. 39, 2, btad075.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  7. Published

    AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data

    Yu, R., Cai, D. & Sun, Y., Jan 2023, In: Bioinformatics. 39, 1, 8 p., btac827.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  8. Published

    EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning

    Tu, J., Li, H., Yan, H. & Zhang, X., Jan 2023, In: Bioinformatics. 39, 1, btac825.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  9. 2022
  10. Published

    HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

    Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

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  11. Published

    scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information

    Su, Y., Wang, F., Zhang, S., Liang, Y., Wong, K. & Li, X., 1 Oct 2022, In: Bioinformatics. 38, 19, p. 4537–4545

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  12. Published

    Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization

    Jin, K., Li, B., Yan, H. & Zhang, X., 15 Jun 2022, In: Bioinformatics. 38, 12, p. 3222–3230

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 3
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  13. Published

    GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering

    Lu, Y., Yu, Z., Wang, Y., Ma, Z., Wong, K. & Li, X., 1 Jun 2022, In: Bioinformatics. 38, 11, p. 3020-3028

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  14. Published

    mzMD: visualization-oriented MS data storage and retrieval

    Yang, R., Ma, J., Zhang, S., Zheng, Y., Wang, L. & Zhu, D., 15 Apr 2022, In: Bioinformatics. 38, 5, p. 2333–2340 btac098.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Check@CityULib
  15. Published

    Reconstructing viral haplotypes using long reads

    Cai, D. & Sun, Y., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2127–2134 8 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  16. XPXP: Improving polygenic prediction by cross-population and cross-phenotype analysis

    Xiao, J., Cai, M., Hu, X., Wan, X., Chen, G. & Yang, C., 1 Apr 2022, In: Bioinformatics. 38, 7, p. 1947-1955

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 2
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  17. Published

    EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network

    Wang, Y., Yang, Y., Ma, Z., Wong, K. & Li, X., 1 Feb 2022, In: Bioinformatics. 38, 3, p. 678-686

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 4
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  18. 2021
  19. Published

    Differential network analysis by simultaneously considering changes in gene interactions and gene expression

    Tu, J., Le Ou-Yang, Yuan Zhu, Yan, H., Hong Qin & Zhang, X., 1 Dec 2021, In: Bioinformatics. 37, 23, p. 4414-4423

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 5
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  20. Published

    CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA

    Rahaman, S., Li, X., Yu, J. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3319–3327

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 1
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  21. Published

    Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine

    Liu, L., Chen, X. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3099–3105 7 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 8
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  22. Published

    Proteo-chemometrics interaction fingerprints of protein-ligand complexes predict binding affinity

    Wang, D. D., Xie, H. & Yan, H., 1 Sep 2021, In: Bioinformatics. 37, 17, p. 2570-2579

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 6
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  23. Published

    HiSCF: leveraging higher-order structures for clustering analysis in biological networks

    Hu, L., Zhang, J., Pan, X., Yan, H. & You, Z., 15 Feb 2021, In: Bioinformatics. 37, 4, p. 542-550

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review

    Scopus citations: 49
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