Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2018): CiteScore 5.94 SJR 4.549 SNIP 1.869

Journal

Journal Metrics

Research Output

  1. 2019
  2. Published

    Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications

    Zhang, S., Li, X., Lin, Q. & Wong, K., 1 Apr 2019, In : Bioinformatics. 35, 7, p. 1108-1115

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 2
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  3. 2018
  4. E-pub ahead of print

    Single-cell RNA-seq Interpretations using Evolutionary Multiobjective Ensemble Pruning

    Li, X., Zhang, S. & Wong, K., 28 Dec 2018, In : Bioinformatics. 9 p., bty1056.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

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  5. Published

    Off-target predictions in CRISPR-Cas9 gene editing using deep learning

    Lin, J. & Wong, K., 8 Sep 2018, In : Bioinformatics. 34, 17, p. i656-i663

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 5
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  6. Published

    Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data

    Guo, F., Wang, D. & Wang, L., 15 Jun 2018, In : Bioinformatics. 34, 12, p. 2012-2018

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 2
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  7. Published

    DiffGraph: An R package for identifying gene network rewiring using differential graphical models

    Zhang, X., Ou-Yang, L., Yang, S., Hu, X. & Yan, H., 1 May 2018, In : Bioinformatics. 34, 9, p. 1571-1573

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

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  8. 2017
  9. Published

    Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts

    Zhu, J., Zhang, H., Li, S. C., Wang, C., Kong, L., Sun, S., Zheng, W. & 1 othersBu, D., 1 Dec 2017, In : Bioinformatics. 33, 23, p. 3749-3757

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 3
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  10. Published

    Matrix completion with side information and its applications in predicting the antigenicity of influenza viruses

    Huang, L., Li, X., Guo, P., Yao, Y., Liao, B., Zhang, W., Wang, F. & 5 othersYang, J., Zhao, Y., Sun, H., He, P. & Yang, J., 15 Oct 2017, In : Bioinformatics. 33, 20, p. 3195-3201

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 3
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  11. Published

    MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences

    Wong, K., 1 Oct 2017, In : Bioinformatics. 33, 19, p. 3028-3035

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 7
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  12. Published

    Incorporating prior information into differential network analysis using non-paranormal graphical models

    Zhang, X., Ou-Yang, L. & Yan, H., 15 Aug 2017, In : Bioinformatics. 33, 16, p. 2436-2445

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 5
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  13. Published

    NSSRF: Global network similarity search with subgraph signatures and its applications

    Zhang, J., Kwong, S., Jia, Y. & Wong, K., Jun 2017, In : Bioinformatics. 33, 11, p. 1696-1702

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 2
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  14. Published

    Inference of cellular level signaling networks using single-cell gene expression data in Caenorhabditis elegans reveals mechanisms of cell fate specification

    Huang, X., Zhu, Y., Chan, L. H. L., Zhao, Z. & Yan, H., 15 May 2017, In : Bioinformatics. 33, 10, p. 1528-1535

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

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  15. Published

    FoldAtlas: a repository for genome-wide RNA structure probing data

    Norris, M., Kwok, C. K., Cheema, J., Hartley, M., Morris, R. J., Aviran, S. & Ding, Y., 15 Jan 2017, In : Bioinformatics. 33, 2, p. 306-308

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 2
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  16. 2016
  17. Assemble CRISPRs from metagenomic sequencing data

    Lei, J. & Sun, Y., 1 Sep 2016, In : Bioinformatics. 32, 17, p. i520-i528

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

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  18. Improve homology search sensitivity of PacBio data by correcting frameshifts

    Du, N. & Sun, Y., 1 Sep 2016, In : Bioinformatics. 32, 17, p. i529-i537

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 4
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  19. 2015
  20. LncRNA-ID: Long non-coding RNA IDentification using balanced random forests

    Achawanantakun, R., Chen, J., Sun, Y. & Zhang, Y., 15 Dec 2015, In : Bioinformatics. 31, 24, p. 3897-3905

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 22
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  21. Reconstructing 16S rRNA genes in metagenomic data

    Yuan, C., Lei, J., Cole, J. & Sun, Y., 15 Jun 2015, In : Bioinformatics. 31, 12, p. i35-i43

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 23
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  22. Published

    FALCON: A high-throughput protein structure prediction server based on remote homologue recognition

    Wang, C., Zhang, H., Zheng, W., Xu, D., Zhu, J., Wang, B., Ning, K. & 3 othersSun, S., Li, S. C. & Bu, D., 23 Apr 2015, In : Bioinformatics. 32, 3, p. 462-464

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 14
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  23. Published

    Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells

    Wong, K., Li, Y. & Peng, C., 23 Apr 2015, In : Bioinformatics. 32, 3, p. 321-324

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 6
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  24. Published

    An efficient algorithm for the blocked pattern matching problem

    Deng, F., Wang, L. & Liu, X., 15 Feb 2015, In : Bioinformatics. 31, 4, p. 532-538

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 4
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  25. StructureFold: Genome-wide RNA secondary structure mapping and reconstruction in vivo

    Tang, Y., Bouvier, E., Kwok, C. K., Ding, Y., Nekrutenko, A., Bevilacqua, P. C. & Assmann, S. M., 19 Jan 2015, In : Bioinformatics. 31, 16, p. 2668-2675

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalNot applicablepeer-review

    Scopus citations: 21
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