Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2023): CiteScore 11.2 SJR 2.574 SNIP 1.547

Indexed in DOAJ

Journal

Journal Metrics
1 - 20 out of 102Page size: 20

Research Output

  1. 2025
  2. Published

    COME: contrastive mapping learning for spatial reconstruction of single-cell RNA sequencing data

    Wei, X., Chen, T., Wang, X., Shen, W., Liu, C., Wu, S. & Wong, H.-S., Mar 2025, In: Bioinformatics. 41, 3, btaf083.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Check@CityULib
  3. Published

    MOSTPLAS: A Self-correction Multi-label Learning Model for Plasmid Host Range Prediction

    Zou, W., Ji, Y., Guan, J. & Sun, Y., Mar 2025, In: Bioinformatics. 41, 3, btaf075.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  4. Published

    MEGA-GO: functions prediction of diverse protein sequence length using Multi-scalE Graph Adaptive neural network

    Lee, Y. (Co-first Author), Gao, P. (Co-first Author), Xu, Y., Wang, Z., Li, S. & Chen, J., Feb 2025, In: Bioinformatics. 41, 2, btaf032.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  5. Published

    EnrichRBP: an automated and interpretable computational platform for predicting and analysing RNA-binding protein events

    Wang, Y., Zhu, H., Wang, Y., Yang, Y., Huang, Y., Zhang, J. & Wong, K.-C. & 1 others, Li, X., Jan 2025, In: Bioinformatics. 41, 1, btaf018.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  6. Published

    Funmap: integrating high-dimensional functional annotations to improve fine-mapping

    Li, Y., Xiao, J., Ming, J., Zeng, Y. & Cai, M., Jan 2025, In: Bioinformatics. 41, 1, btaf017.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  7. Published

    Proteoform identification and quantification based on alignment graphs

    Zhan, Z. & Wang, L., Jan 2025, In: Bioinformatics. 41, 1, btaf007.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  8. 2024
  9. Published

    ViraLM: empowering virus discovery through the genome foundation model

    Peng, C. (Co-first Author), Shang, J. (Co-first Author), Guan, J., Wang, D. & Sun, Y., Dec 2024, In: Bioinformatics. 40, 12, btae704.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  10. Published

    Deep learning-based enhancement of fluorescence labeling for accurate cell lineage tracing during embryogenesis

    Li, Z. (Co-first Author), Xie, D. (Co-first Author), Ma, Y. (Co-first Author), Zhao, C., You, S., Yan, H. & Zhao, Z., Nov 2024, In: Bioinformatics. 40, 11, 8 p., btae626.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  11. Published

    VirTAXA: Enhancing RNA virus taxonomic classification with remote homology search and tree-based validation

    Zhu, Y., Chen, G. & Sun, Y., Oct 2024, In: Bioinformatics. 40, 10, btae575.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

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  12. Published

    Accurate and efficient protein embedding using multi-teacher distillation learning

    Shang, J., Peng, C., Ji, Y., Guan, J., Cai, D., Tang, X. & Sun, Y., Sept 2024, In: Bioinformatics. 40, 9, btae567.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  13. Published

    Unraveling spatial domain characterization in spatially resolved transcriptomics with robust graph contrastive clustering

    Zhang, Y., Yu, Z., Wong, K.-C. & Li, X., Jul 2024, In: Bioinformatics. 40, 7, btae451.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 3
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  14. Published

    Coding genomes with gapped pattern graph convolutional network

    Wang, R. H., Ng, Y. K., Zhang, X., Wang, J. & Li, S. C., Apr 2024, In: Bioinformatics. 40, 4, btae188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  15. Published

    Fast peak error correction algorithms for proteoform identification using top-down tandem mass spectra

    Zhan, Z. & Wang, L., Apr 2024, In: Bioinformatics. 40, 4, 8 p., btae149.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  16. Published

    scDMV: a zero–one inflated beta mixture model for DNA methylation variability with scBS-seq data

    Zhou, Y., Zhang, Y., Peng, M., Zhang, Y., Li, C., Shu, L. & Hu, Y. & 2 others, Su, J. & Xu, J., Jan 2024, In: Bioinformatics. 40, 1, btad772.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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  17. 2023
  18. Published

    GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data

    Liao, H., Shang, J. & Sun, Y., Dec 2023, In: Bioinformatics. 39, 12, btad747.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
    Check@CityULib
  19. Published

    Automated exploitation of deep learning for cancer patient stratification across multiple types

    Sun, P., Fan, S., Li, S., Zhao, Y., Lu, C., Wong, K.-C. & Li, X., Nov 2023, In: Bioinformatics. 39, 11, btad654.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
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  20. MIX-TPI: a flexible prediction framework for TCR-pMHC interactions based on multimodal representations

    Yang, M., Huang, Z.-A., Zhou, W., Ji, J., Zhang, J., He, S. & Zhu, Z., Aug 2023, In: Bioinformatics. 39, 8, btad475.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 4
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  21. Published

    Chromothripsis Detection with Multiple Myeloma Patients Based on Deep Graph Learning

    Yu, J., Chen, N., Zheng, Z., Gao, M., Liang, N. & Wong, K.-C., Jul 2023, In: Bioinformatics. 39, 7, 9 p., btad422.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 2
    Check@CityULib
  22. Published

    HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer

    Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 8
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  23. Published

    Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping

    Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.

    Research output: Journal Publications and Reviews › RGC 21 - Publication in refereed journal › peer-review

    Scopus citations: 1
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