Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2020): CiteScore 9.9 SJR 3.599 SNIP 2.056

Journal

Journal Metrics

Research Output

  1. 2021
  2. Published

    CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA

    Rahaman, S., Li, X., Yu, J. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 9, p. 3319–3327

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  3. Published

    Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine

    Liu, L., Chen, X. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3099–3105 7 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  4. Published

    Proteo-chemometrics interaction fingerprints of protein-ligand complexes predict binding affinity

    Wang, D. D., Xie, H. & Yan, H., 1 Sep 2021, In: Bioinformatics. 37, 17, p. 2570-2579

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 2
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  5. Published

    HiSCF: leveraging higher-order structures for clustering analysis in biological networks

    Hu, L., Zhang, J., Pan, X., Yan, H. & You, Z., 15 Feb 2021, In: Bioinformatics. 37, 4, p. 542-550

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  6. 2020
  7. Published

    PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data

    Wang, S., Jiang, Y. & Li, S., Dec 2020, In: Bioinformatics. 36, 22-23, p. 5499–5506

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

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  8. Published

    scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation

    Jin, K., Ou-Yang, L., Zhao, X., Yan, H. & Zhang, X., 15 May 2020, In: Bioinformatics. 36, 10, p. 3131-3138

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 3
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  9. Published

    Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity

    Tu, J., Ou-Yang, L., Yan, H., Zhang, X. & Qin, H., 1 May 2020, In: Bioinformatics. 36, 9, p. 2755-2762

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 4
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  10. Published

    Context awareness and embedding for biomedical event extraction

    Yan, S. & Wong, K., 15 Jan 2020, In: Bioinformatics. 36, 2, p. 637-643

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 4
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  11. 2019
  12. Published

    EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning

    Zhang, X., Ou-Yang, L., Yang, S., Zhao, X., Hu, X. & Yan, H., 15 Nov 2019, In: Bioinformatics. 35, 22, p. 4827-4829

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 10
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  13. Published

    DiffNetFDR: differential network analysis with false discovery rate control

    Zhang, X., Ou-Yang, L., Yang, S., Hu, X. & Yan, H., 1 Sep 2019, In: Bioinformatics. 35, 17, p. 3184-3186

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 4
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  14. Published

    Single-cell RNA-seq interpretations using evolutionary multiobjective ensemble pruning

    Li, X., Zhang, S. & Wong, K., 15 Aug 2019, In: Bioinformatics. 35, 16, p. 2809-2817 9 p.

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  15. Published

    Synergizing CRISPR/Cas9 off-target predictions for ensemble insights and practical applications

    Zhang, S., Li, X., Lin, Q. & Wong, K., 1 Apr 2019, In: Bioinformatics. 35, 7, p. 1108-1115

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 9
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  16. 2018
  17. Published

    Off-target predictions in CRISPR-Cas9 gene editing using deep learning

    Lin, J. & Wong, K., 8 Sep 2018, In: Bioinformatics. 34, 17, p. i656-i663

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 48
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  18. De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding

    Chen, J., Zhao, Y. & Sun, Y., 1 Sep 2018, In: Bioinformatics. 34, 17, p. 2927-2935

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 41
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  19. Published

    Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data

    Guo, F., Wang, D. & Wang, L., 15 Jun 2018, In: Bioinformatics. 34, 12, p. 2012-2018

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 15
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  20. Published

    DiffGraph: An R package for identifying gene network rewiring using differential graphical models

    Zhang, X., Ou-Yang, L., Yang, S., Hu, X. & Yan, H., 1 May 2018, In: Bioinformatics. 34, 9, p. 1571-1573

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 7
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  21. 2017
  22. Published

    Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts

    Zhu, J., Zhang, H., Li, S. C., Wang, C., Kong, L., Sun, S., Zheng, W. & 1 others, Bu, D., 1 Dec 2017, In: Bioinformatics. 33, 23, p. 3749-3757

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 20
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  23. Published

    Matrix completion with side information and its applications in predicting the antigenicity of influenza viruses

    Huang, L., Li, X., Guo, P., Yao, Y., Liao, B., Zhang, W., Wang, F. & 5 others, Yang, J., Zhao, Y., Sun, H., He, P. & Yang, J., 15 Oct 2017, In: Bioinformatics. 33, 20, p. 3195-3201

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 13
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  24. Published

    MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences

    Wong, K., 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3028-3035

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 11
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  25. Published

    Incorporating prior information into differential network analysis using non-paranormal graphical models

    Zhang, X., Ou-Yang, L. & Yan, H., 15 Aug 2017, In: Bioinformatics. 33, 16, p. 2436-2445

    Research output: Journal Publications and Reviews (RGC: 21, 22, 62)21_Publication in refereed journalpeer-review

    Scopus citations: 29
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