Bioinformatics

Bioinformatics

ISSNs: 1367-4803, 0266-7061, 1367-4811

OXFORD UNIV PRESS, United Kingdom

Scopus rating (2022): CiteScore 12.2 SJR 2.94 SNIP 1.954

Indexed in DOAJ

Journal

Journal Metrics

Research Output

  1. 2023
  2. Published

    GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data

    Liao, H., Shang, J. & Sun, Y., Dec 2023, In: Bioinformatics. 39, 12, btad747.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  3. Published

    Automated exploitation of deep learning for cancer patient stratification across multiple types

    Sun, P., Fan, S., Li, S., Zhao, Y., Lu, C., Wong, K. & Li, X., Nov 2023, In: Bioinformatics. 39, 11, btad654.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  4. MIX-TPI: a flexible prediction framework for TCR-pMHC interactions based on multimodal representations

    Yang, M., Huang, Z., Zhou, W., Ji, J., Zhang, J., He, S. & Zhu, Z., Aug 2023, In: Bioinformatics. 39, 8, btad475.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  5. Published

    Chromothripsis Detection with Multiple Myeloma Patients Based on Deep Graph Learning

    Yu, J., Chen, N., Zheng, Z., Gao, M., Liang, N. & Wong, K., Jul 2023, In: Bioinformatics. 39, 7, 9 p., btad422.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  6. Published

    HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer

    Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  7. Published

    Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping

    Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  8. Published

    VirBot: an RNA viral contig detector for metagenomic data

    Chen, G., Tang, X., Shi, M. & Sun, Y., Mar 2023, In: Bioinformatics. 39, 3, btad093.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 2
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  9. Published

    PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations

    Yu, X., Xiao, J., Cai, M., Jiao, Y., Wan, X., Liu, J. & Yang, C., Feb 2023, In: Bioinformatics. 39, 2, btad068.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
    Check@CityULib
  10. Published

    scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering

    Wang, Y., Yu, Z., Li, S., Bian, C., Liang, Y., Wong, K. & Li, X., Feb 2023, In: Bioinformatics. 39, 2, btad075.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
    Check@CityULib
  11. Published

    AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data

    Yu, R., Cai, D. & Sun, Y., Jan 2023, In: Bioinformatics. 39, 1, 8 p., btac827.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 3
    Check@CityULib
  12. Published

    EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning

    Tu, J., Li, H., Yan, H. & Zhang, X., Jan 2023, In: Bioinformatics. 39, 1, btac825.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 5
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  13. 2022
  14. Published

    HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

    Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
    Check@CityULib
  15. Published

    scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information

    Su, Y., Wang, F., Zhang, S., Liang, Y., Wong, K. & Li, X., 1 Oct 2022, In: Bioinformatics. 38, 19, p. 4537–4545

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
    Check@CityULib
  16. Published

    Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization

    Jin, K., Li, B., Yan, H. & Zhang, X., 15 Jun 2022, In: Bioinformatics. 38, 12, p. 3222–3230

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 4
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  17. Published

    GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering

    Lu, Y., Yu, Z., Wang, Y., Ma, Z., Wong, K. & Li, X., 1 Jun 2022, In: Bioinformatics. 38, 11, p. 3020-3028

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 1
    Check@CityULib
  18. Published

    mzMD: visualization-oriented MS data storage and retrieval

    Yang, R., Ma, J., Zhang, S., Zheng, Y., Wang, L. & Zhu, D., 15 Apr 2022, In: Bioinformatics. 38, 5, p. 2333–2340 btac098.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Check@CityULib
  19. Published

    Reconstructing viral haplotypes using long reads

    Cai, D. & Sun, Y., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2127–2134 8 p.

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 4
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  20. XPXP: Improving polygenic prediction by cross-population and cross-phenotype analysis

    Xiao, J., Cai, M., Hu, X., Wan, X., Chen, G. & Yang, C., 1 Apr 2022, In: Bioinformatics. 38, 7, p. 1947-1955

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 8
    Check@CityULib
  21. Published

    EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network

    Wang, Y., Yang, Y., Ma, Z., Wong, K. & Li, X., 1 Feb 2022, In: Bioinformatics. 38, 3, p. 678-686

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 9
    Check@CityULib
  22. 2021
  23. Published

    Differential network analysis by simultaneously considering changes in gene interactions and gene expression

    Tu, J., Le Ou-Yang, Yuan Zhu, Yan, H., Hong Qin & Zhang, X., 1 Dec 2021, In: Bioinformatics. 37, 23, p. 4414-4423

    Research output: Journal Publications and ReviewsRGC 21 - Publication in refereed journalpeer-review

    Scopus citations: 9
    Check@CityULib
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