Bioinformatics
Bioinformatics
ISSNs: 1367-4803, 0266-7061, 1367-4811
OXFORD UNIV PRESS, United Kingdom
Scopus rating (2021): CiteScore 13.4 SJR 3.4 SNIP 2.272
Journal
Research Output
- 2023
- Published
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer
Ji, Y., Shang, J., Tang, X. & Sun, Y., May 2023, In: Bioinformatics. 39, 5, btad283.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping
Ren, X., Shao, Y., Zhang, Y., Ni, Y., Bi, Y. & Li, R., Apr 2023, In: Bioinformatics. 39, 4, 2 p., btad188.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
VirBot: an RNA viral contig detector for metagenomic data
Chen, G., Tang, X., Shi, M. & Sun, Y., Mar 2023, In: Bioinformatics. 39, 3, btad093.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations
Yu, X., Xiao, J., Cai, M., Jiao, Y., Wan, X., Liu, J. & Yang, C., Feb 2023, In: Bioinformatics. 39, 2, btad068.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering
Wang, Y., Yu, Z., Li, S., Bian, C., Liang, Y., Wong, K. & Li, X., Feb 2023, In: Bioinformatics. 39, 2, btad075.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data
Yu, R., Cai, D. & Sun, Y., Jan 2023, In: Bioinformatics. 39, 1, 8 p., btac827.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning
Tu, J., Li, H., Yan, H. & Zhang, X., Jan 2023, In: Bioinformatics. 39, 1, btac825.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 1 - 2022
- Published
HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization
Cai, D., Shang, J. & Sun, Y., 15 Dec 2022, In: Bioinformatics. 38, 24, p. 5360–5367Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
scWMC: weighted matrix completion-based imputation of scRNA-seq data via prior subspace information
Su, Y., Wang, F., Zhang, S., Liang, Y., Wong, K. & Li, X., 1 Oct 2022, In: Bioinformatics. 38, 19, p. 4537–4545Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization
Jin, K., Li, B., Yan, H. & Zhang, X., 15 Jun 2022, In: Bioinformatics. 38, 12, p. 3222–3230Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 3 - Published
GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering
Lu, Y., Yu, Z., Wang, Y., Ma, Z., Wong, K. & Li, X., 1 Jun 2022, In: Bioinformatics. 38, 11, p. 3020-3028Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 1 - Published
mzMD: visualization-oriented MS data storage and retrieval
Yang, R., Ma, J., Zhang, S., Zheng, Y., Wang, L. & Zhu, D., 15 Apr 2022, In: Bioinformatics. 38, 5, p. 2333–2340 btac098.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
- Published
Reconstructing viral haplotypes using long reads
Cai, D. & Sun, Y., 15 Apr 2022, In: Bioinformatics. 38, 8, p. 2127–2134 8 p.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 1 XPXP: Improving polygenic prediction by cross-population and cross-phenotype analysis
Xiao, J., Cai, M., Hu, X., Wan, X., Chen, G. & Yang, C., 1 Apr 2022, In: Bioinformatics. 38, 7, p. 1947-1955Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 2- Published
EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network
Wang, Y., Yang, Y., Ma, Z., Wong, K. & Li, X., 1 Feb 2022, In: Bioinformatics. 38, 3, p. 678-686Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 4 - 2021
- Published
Differential network analysis by simultaneously considering changes in gene interactions and gene expression
Tu, J., Le Ou-Yang, Yuan Zhu, Yan, H., Hong Qin & Zhang, X., 1 Dec 2021, In: Bioinformatics. 37, 23, p. 4414-4423Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 5 - Published
CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA
Rahaman, S., Li, X., Yu, J. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3319–3327Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 1 - Published
Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine
Liu, L., Chen, X. & Wong, K., 1 Oct 2021, In: Bioinformatics. 37, 19, p. 3099–3105 7 p.Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 8 - Published
Proteo-chemometrics interaction fingerprints of protein-ligand complexes predict binding affinity
Wang, D. D., Xie, H. & Yan, H., 1 Sep 2021, In: Bioinformatics. 37, 17, p. 2570-2579Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 6 - Published
HiSCF: leveraging higher-order structures for clustering analysis in biological networks
Hu, L., Zhang, J., Pan, X., Yan, H. & You, Z., 15 Feb 2021, In: Bioinformatics. 37, 4, p. 542-550Research output: Journal Publications and Reviews (RGC: 21, 22, 62) › 21_Publication in refereed journal › peer-review
Scopus citations: 49